SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13985

Length: 740 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13985

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	55%
FL-Next	tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	68%
Blast2go	macromolecule metabolic process	GO:0043170	Biological Process	68%
Blast2go	primary metabolic process	GO:0044238	Biological Process	68%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	0.0	68%
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	68%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
168		33		66	0.997452
175	66			33	0.997452
184	33		66		0.997452
189	66		33		0.997452
192	33	33		33	0.997753
199		33		66	1.0
201	33		66		1.0
223	33		66		0.997452
228		33		66	0.997452
264	57		42		1.0
276	28		71		1.0
277	85	14			0.993533
278			14	85	0.993533
282	66		33		1.0
285		83	16		0.994512
294	66	33			1.0
303		33		66	1.0
309	33	66			1.0
312		16		83	0.994512
315		33		66	1.0
324	50		50		1.0
325	16		83		0.994512
328	33		66		1.0
331		83	16		0.994512
336		66		33	1.0
339	83		16		0.994512
343	33		66		1.0
348		83	16		0.994512
357	66	33			1.0
366		83		16	0.994512
369		33		66	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
95	106	TGG TGG TGG TGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain