SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13973

Length: 2307 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13973
ATGGGGATTATTGAAAGGTCTCCAGGTCGAAACTCGGGCCGGCACAGCTGAAGAAGGAGCGCTTTAACGCCGTGGGCGGCCGAACCGGCGACCTCGGATCTTTACTACCAGAAAAGTAGACACATCACAAAAATCATTTAGAAAATCAGACGAAGATTATTTAATGATCTGGAGACCCCGTCCTCCTCCTCCTGTCTTCACGGTTCTGGCAAAGCAGCATTGATTACCTAATAAAGACAAGACTGACTTTAGCCTCCCCAATATATTTTTCCTCGTTTTCCATTGGGTTTTTGACTTGGATTGGAGTACCTAGGCACTTGTTTGTTCGGTGGGTTCATTCATTCTGCCCCGCTATAAATTTGTGCTTCCATTCAGATCAGCAAGCTGGGTCATTGAGAATTTCGTGATGTGTTCAAATTATATATATCCCTCTTAATGATCCCGATTGAGTATTGAGGTGAAGAAGTATACGCAGCAAACCGAGATCAGCGACCTTCATTGGCCGGATCCCTGTGCGCGCTGTATGCTTTGGTTTTGCTGTAGGAATTGGCGGTGAAGGACTCATTCTCTGGTTTTAATTGAGTTAGCAGGACCAATATTTTCACATGTTCCCCTTCGGTCGACGGAGAACTCAGCCCCGAGCCTCAAGATCCCCGGGCCTCATAGGAATGGATCATGTAGATTCAGGGCAAAGACATCATTACATTGCTAAAGTTCTTTTGGCTGCCTGTCTTACCATTTTTTGTATTATTGCTCTGAGACAGTCATCTGGTTTTAATGGTTCAGATGTGTTCTCTAGGCATGAATTGGGGGTCACTCATGTGCTAGTAACAGGTGGTGCTGGTTATATTGGTTCACATGCTGTTTTTCGACTTCTAAAGGATTCCTACAGAGTAACCATTGTGGATAATCTTTCACGGGGAAATCTAGGGGCTGTAAAGCTTCTTAAAGAGCAATTTCCAGAACCGGGAAGGCTGCAGTTTATTTGTGCCGACTTGGGTGATAGCAAAGCGGTAAATAAAATATTTGCAGAAAATGCATTTGACGCAGTAATGCACTTCGCTGCTGTGGCTTATGTGGGCGAGAGCACAATGGATCCTCTTAGGTACTATCATAACATTACATCCAATACATTGACAGTATTAGAAGCCATGGCTGCGCATGGGGTGAAGAAACTGATATATTCAAGCACATGTGCAACTTATGGGGAACCTGCTAAAATGCCTATTACAGAGGAAACTCCTCAGGTTCCTATAAATCCATATGGAAAAGCAAAGAAAATGGCAGAGGACATTATCCAAGATTTTTCAAGAAAATCAAACATGGCTGTTATGCTATTGAGGTATTTCAATGTAATTGGTTCAGATCCAGAGGGCAGGTTAGGGGAAGCACCAAGACCAGAACTTCGGGAACATGGACGAATCTCGGGTGCATGCTTCGATGCAGCCAGGGGAATTATTCCTGGATTGAAAGTTAGAGGAACAGATTATAGTACTCCTGATGGTACCTGTATCAGGGACTACATTGATGTGACAGATTTGGTGGATGCGCATGTGAAAGCTTTGGTTAATGTTCGTCCTGGTGAAGTAAGGATATACAATGTTGGCACTGGAAAAGGCAGGTCAGTCAAGGAGTTTGTAGAAGCTTGCAAGGCTGCAACTGGAGTCAATATTACAGTAGAGTATCTTGGTCGGAGGCCAGGAGATTATGCAGAAGTATATAGTGATCCTTCCAAAATTAACCAAGAGTTAAGCTGGTCTGCAAAATATACAAATCTCAAGGAAAGCCTTACTGTAGCCTGGAAATGGCAGAAAGCACACCCCAATGGGTATGGATCATCCCCTGTAGCGGTGATTTGATTTTCCTATGTGGTGCCTTTTTGATATCTATCTGCTGCAATTCATTGTTGAAGCAAAAGCAGTGCCCTTGGTTATCCCATATGTGGGAACATGCCAAATCTGGTCGTATTGTACAGTATATGAGGAAAGTACTTGCGGGCATCTGTAGCAAATAAGAGTAGTTAGGATATTTATTGAGCTTATTTTTCCTCTCCAGCAAGGATGCTGGAGCAGCATTTTTCATTATTTCATAGCTGGGAGGTACATAATCTAAATAGAGATGGAGATCCTATTGATTTTTTATGTGATATCCTATTAATTTTTTATGTAGTTTTAGAATTGGTCAATAAAAGTTAGTTTCTGGAATCCATTTAATGTCTATGAAAAGCTTGGATCATTTTTCAAGTGGCAGCATAAGGTTCAATATATTATGTAGTTTTAGAATTGGTCAATAAAAGTTAGTTCTTAG

Ace file of the UniGene sp_v1.1_unigene13973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MUR4; MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic; K12448 UDP-arabinose 4-epimerase [EC:5.1.3.5]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	mur4 (murus 4) udp-arabinose 4-epimerase catalytic	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-arabinose 4-epimerase.	EC:5.1.3.5	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	86%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	86%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	86%
Blast2go	Metabolic pathways	01100	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	UDP-arabinose 4-epimerase.	EC:5.1.3.5	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Amino sugar and nucleotide sugar metabolism	00520		0.0	77%
AutoFact	Metabolic pathways	01100		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	arabinose biosynthetic process	GO:0019567	Biological Process	86%
Blast2go	nucleotide-sugar metabolic process	GO:0009225	Biological Process	86%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	86%
Blast2go	galactose metabolic process	GO:0006012	Biological Process	86%
Blast2go	UDP-arabinose 4-epimerase activity	GO:0050373	Molecular Function	86%
Blast2go	UDP-glucose 4-epimerase activity	GO:0003978	Molecular Function	86%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	86%
Blast2go	UDP-glucose 4-epimerase	IPR005886	-	86%
Blast2go	NAD(P)-binding domain	IPR016040	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKM2

Fln msg: your sequence is longer than subject: 418 - 356

Fln protein: MFPFGRRRTQPRASRSPGLIGMDHVDSGQRHHYIAKVLLAACLTIFCIIALRQSSGFNGSDVFSRHELGVTHVLVTGGAGYIGSHAVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGRLQFICADLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLTVLEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQDFSRKSNMAVMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELSWSAKYTNLKESLTVAWKWQKAHPNGYGSSPVAVI*

Protein Length: 419

Fln nts: ATGGGGATTATTGAAAGGTCTCCAGGTCGAAACTCGGGCCGGCACAGCTGAAGAAGGAGCGCTTTAACGCCGTGGGCGGCCGAACCGGCGACCTCGGATCTTTACTACCAGAAAAGTAGACACATCACAAAAATCATTTAGAAAATCAGACGAAGATTATTTAATGATCTGGAGACCCCGTCCTCCTCCTCCTGTCTTCACGGTTCTGGCAAAGCAGCATTGATTACCTAATAAAGACAAGACTGACTTTAGCCTCCCCAATATATTTTTCCTCGTTTTCCATTGGGTTTTTGACTTGGATTGGAGTACCTAGGCACTTGTTTGTTCGGTGGGTTCATTCATTCTGCCCCGCTATAAATTTGTGCTTCCATTCAGATCAGCAAGCTGGGTCATTGAGAATTTCGTGATGTGTTCAAATTATATATATCCCTCTTAATGATCCCGATTGAGTATTGAGGTGAAGAAGTATACGCAGCAAACCGAGATCAGCGACCTTCATTGGCCGGATCCCTGTGCGCGCTGTATGCTTTGGTTTTGCTGTAGGAATTGGCGGTGAAGGACTCATTCTCTGGTTTTAATTGAGTTAGCAGGACCAATATTTTCAC_-_ATGTTCCCCTTCGGTCGACGGAGAACTCAGCCCCGAGCCTCAAGATCCCCGGGCCTCATAGGAATGGATCATGTAGATTCAGGGCAAAGACATCATTACATTGCTAAAGTTCTTTTGGCTGCCTGTCTTACCATTTTTTGTATTATTGCTCTGAGACAGTCATCTGGTTTTAATGGTTCAGATGTGTTCTCTAGGCATGAATTGGGGGTCACTCATGTGCTAGTAACAGGTGGTGCTGGTTATATTGGTTCACATGCTGTTTTTCGACTTCTAAAGGATTCCTACAGAGTAACCATTGTGGATAATCTTTCACGGGGAAATCTAGGGGCTGTAAAGCTTCTTAAAGAGCAATTTCCAGAACCGGGAAGGCTGCAGTTTATTTGTGCCGACTTGGGTGATAGCAAAGCGGTAAATAAAATATTTGCAGAAAATGCATTTGACGCAGTAATGCACTTCGCTGCTGTGGCTTATGTGGGCGAGAGCACAATGGATCCTCTTAGGTACTATCATAACATTACATCCAATACATTGACAGTATTAGAAGCCATGGCTGCGCATGGGGTGAAGAAACTGATATATTCAAGCACATGTGCAACTTATGGGGAACCTGCTAAAATGCCTATTACAGAGGAAACTCCTCAGGTTCCTATAAATCCATATGGAAAAGCAAAGAAAATGGCAGAGGACATTATCCAAGATTTTTCAAGAAAATCAAACATGGCTGTTATGCTATTGAGGTATTTCAATGTAATTGGTTCAGATCCAGAGGGCAGGTTAGGGGAAGCACCAAGACCAGAACTTCGGGAACATGGACGAATCTCGGGTGCATGCTTCGATGCAGCCAGGGGAATTATTCCTGGATTGAAAGTTAGAGGAACAGATTATAGTACTCCTGATGGTACCTGTATCAGGGACTACATTGATGTGACAGATTTGGTGGATGCGCATGTGAAAGCTTTGGTTAATGTTCGTCCTGGTGAAGTAAGGATATACAATGTTGGCACTGGAAAAGGCAGGTCAGTCAAGGAGTTTGTAGAAGCTTGCAAGGCTGCAACTGGAGTCAATATTACAGTAGAGTATCTTGGTCGGAGGCCAGGAGATTATGCAGAAGTATATAGTGATCCTTCCAAAATTAACCAAGAGTTAAGCTGGTCTGCAAAATATACAAATCTCAAGGAAAGCCTTACTGTAGCCTGGAAATGGCAGAAAGCACACCCCAATGGGTATGGATCATCCCCTGTAGCGGTGATTTGA___TTTTCCTATGTGGTGCCTTTTTGATATCTATCTGCTGCAATTCATTGTTGAAGCAAAAGCAGTGCCCTTGGTTATCCCATATGTGGGAACATGCCAAATCTGGTCGTATTGTACAGTATATGAGGAAAGTACTTGCGGGCATCTGTAGCAAATAAGAGTAGTTAGGATATTTATTGAGCTTATTTTTCCTCTCCAGCAAGGATGCTGGAGCAGCATTTTTCATTATTTCATAGCTGGGAGGTACATAATCTAAATAGAGATGGAGATCCTATTGATTTTTTATGTGATATCCTATTAATTTTTTATGTAGTTTTAGAATTGGTCAATAAAAGTTAGTTTCTGGAATCCATTTAATGTCTATGAAAAGCTTGGATCATTTTTCAAGTGGCAGCATAAGGTTCAATATATTATGTAGTTTTAGAATTGGTCAATAAAAGTTAGTTCTTAG

Fln Alignment:

sp_v1.1_unigene13973___VLVTGGAGYIGSHAVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGR--LQFICADLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLTVLEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQD-FSRKSNMAVMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKALVNVRPGE---VRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELSWSAKYTNLKESLTVAWKWQKAHPNGY
B8LKM2_______________ILVTGGAGFIGSHTVLQLLEDGYEVYIIDNLDNSVEEAVNRVRDLVDQRFRQNLHFFLGDLCKKEDIEKVFSLAKFDAVIHFAGLKAVGESVANPFRYYKNNLVGTLNLYEIMAKHGCKKMVFSSSATVYGQPKVIPCVEDFQLSAMNPYGRTKLFLEEIARDVYQADPDWRIILLRYFNPVGAHPSGQIGEDPK---GIPNNLMPFIQQVAVGRQPELNVYGNDYPTKDGTAVRDYIHVVDLADGHISALQKLFKASDIGCTAYNLGTGCGTSVLEMVAAFEKASGKNIPVKFCPRRPGDATAVYASTEKAEHELGWKAKY-GIEEMCRDQWNWARQNPWGY

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
807	71	28			1.0
809			71	28	1.0
811	71		28		1.0
816	71	28			1.0
821		28	71		1.0
822			71	28	1.0
993		16		83	0.994512
996			16	83	0.994512
997	16			83	0.994512
1002	16	83			0.994512
1004	85		14		0.993533
1006		14		85	0.993533
1173			10	90	0.90298
1460	11		88		0.923564
2166	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
181	193	TCC TCC TCC TCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain