SustainPineDB

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Assembly info
Unigenes
SNPs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13925

Length: 568 nt

Origin of reads: Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene13925
GTGTGCAGTTGGAGGGTTATTCCCATGTTCACCGGCATTTCCGAGGGCAACCCACCTCAGAAAAATAAATGGTGGTCGATACAAAGAGCGAGCTATCATGGCTGGAATGCAATCCCTTATTGGCTCCTGTTCCACTTTTAACCCCATTCTCTCCACCTCTTACCGACTTATCCCCTGCAGCTCATTCGTTTGCACAAAAGAGACCAACAATTTTCTAGTTCCCACAGCATGTAACAATAACTGCCTCTGCCAATACTGCTACTCGTATGTCGACAGGACCTTCACAAACGGGGTCCTCAGTTCTGTGAGCCTCAATCCAATCCATGTCTCCCCTATTCTGAAAATCCCCAATTTCGTCTTTGGGTGCGTGCCATTACCGGTACCGATCTCGTGGGTCTGAGCAAGGGCTCTCTGTCATTCATTTCCTACTACATTCTGGACCATGTTCTTTGGCCACAATCCACAGGCATTCTTCTGTTCGGAGACTCCCCATTTTACAAATATCTCCATTACATGCCCCGTATACCCAATCCATTCCTCTGCCCTATTTCAACAGAGTGGCCTAAAC

Ace file of the UniGene sp_v1.1_unigene13925 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartic proteinase nepenthesin-2, putative n=1 Tax=Ricinus communis RepID=B9SZZ1_RICCO	-	-	1.0e-15	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	aspartic proteinase nepenthesin-2	-	-	2.05903e-15	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response	GO:0006952	Biological Process	2.05903e-15	54%
Blast2go	response to inorganic substance	GO:0010035	Biological Process	2.05903e-15	54%
Blast2go	primary metabolic process	GO:0044238	Biological Process	2.05903e-15	54%
Blast2go	secondary metabolic process	GO:0019748	Biological Process	2.05903e-15	54%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	2.05903e-15	54%
Blast2go	peptidase activity	GO:0008233	Molecular Function	2.05903e-15	54%
Blast2go	transition metal ion binding	GO:0046914	Molecular Function	2.05903e-15	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSK7

Fln msg: Separated hits, possible frame ERROR between 116 and 388, Distance to subject end: 162 aas, your sequence is shorter than subject: 189 - 383

Fln protein: VQLEGYSHVHRHFRGQPTSEK*MVVDTKSELSWLECNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVGLSKGSLSFISYYILDHVLWPQSTGILLFGDSPFYKYLHYMPRIPNPFLCPISTEWPK

Protein Length: 190

Fln nts: GTGTGCAGTTGGAGGGTTATTCCCATGTTCACCGGCATTTCCGAGGGCAACCCACCTCAGAAAAATAAATGGTGGTCGATACAAAGAGCGAGCTATCATGGCTGGAATGCAATCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTCGTGGGTCTGAGCAAGGGCTCTCTGTCATTCATTTCCTACTACATTCTGGACCATGTTCTTTGGCCACAATCCACAGGCATTCTTCTGTTCGGAGACTCCCCATTTTACAAATATCTCCATTACATGCCCCGTATACCCAATCCATTCCTCTGCCCTATTTCAACAGAGTGGCCTAAAC

Fln Alignment:

sp_v1.1_unigene13925___GQPTSEK*MVVDTKSELSWLECNPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVGLSKGSLSFIS
C0PSK7_______________GTPALSLSAIMDTGSDLVWTKCNPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVGFGRGSLSLVS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
95	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain