SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13921

Length: 1306 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13921

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	carbohydrate binding protein, putative (EC:2.7.12.2)	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	lectin-like protein kinase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	71%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	71%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	71%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	71%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	71%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	71%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	71%
Blast2go	Protein kinase-like domain	IPR011009	-	71%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	71%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: your sequence is shorter than subject: 250 - 636

Fln protein: NLVRLLGWCHEDNELLLIYDLMPNGSLDKLIFEEDAKHEVLDWHHRCKIVCGVASAMLYLHEECEQQVIHRDLKASNIMLDSDYNARLGDFGLARLIELNKNSYTTTAIAGTPGYIAPEYFHTGRSTTESDVFGFGAVALEVACGRRPRTEAQLYLVDWVWGLYREGRLLDAADPRLNEFDKDEMICMLLVGMACSHPNPQERPTMRQVLQILTKDAPPPLMPLFKPAFVWPAPGMTDIQSSSSDFSTQ*

Protein Length: 251

Fln nts: GAACCTTGTGAGGCTGTTAGGTTGGTGCCATGAAGATAACGAACTGCTGCTGATCTATGACTTGATGCCCAATGGTAGCCTGGATAAGTTGATTTTTGAAGAAGATGCTAAGCACGAGGTTTTGGACTGGCATCACAGATGCAAGATAGTGTGTGGAGTTGCCTCGGCTATGCTCTATCTGCACGAAGAATGTGAGCAGCAGGTGATCCACAGGGATTTAAAGGCTAGCAACATCATGCTTGATTCTGATTACAATGCTCGTCTGGGTGATTTTGGGCTTGCTAGATTGATTGAACTTAATAAGAACTCTTATACCACAACTGCAATAGCAGGTACTCCCGGGTATATTGCACCAGAGTACTTTCACACCGGGAGGTCTACAACTGAATCTGATGTGTTTGGTTTTGGGGCTGTGGCTCTAGAGGTTGCTTGTGGGAGAAGACCCAGAACAGAGGCACAGCTTTATCTTGTTGATTGGGTCTGGGGGCTGTATCGAGAAGGCAGGCTTCTTGATGCTGCAGATCCCAGGCTAAATGAGTTTGATAAAGATGAGATGATATGCATGTTACTTGTTGGTATGGCTTGCTCTCATCCCAACCCTCAAGAAAGGCCAACAATGAGACAGGTTCTACAAATCCTTACCAAAGATGCACCCCCTCCACTTATGCCCTTGTTTAAGCCTGCATTTGTCTGGCCTGCCCCCGGTATGACTGATATCCAATCTAGTTCTAGTGATTTTAGCACACAGTAA___AACAGAGCAGCTTTGAATGTGTAGATAAGAAGATCAAGGGAAGTGAGCAGATTTGGGGCAATCCTCTCTTCCCCTCAAATTTCCTTTTTCCTTGTGTTTGGAACATTGTTTTGGTTGAAGAGGATGTGGAGCAGGGATGGGTATTTTCAATTATTTTAGGAATTTCGTTTTTTCCCATTTTGTGTGTGTGTATTGCCATGCTCGTTCAAGAAATCAATCAGGTGTCCTTTTGTAGTTTGTCTTGTTCTTTTGCTTTTACTCGAGGAAGTGGATCAAGTACCTGCTCGTAGAAATGTGGCCTTGCCACATGGGTAGATAAAGTCAAAGGCCTCGCCCTGTGCTAAAATCTCTTCTCCGTTATACTATCCCATATGACATGTAAAAGCAACAGCGGAAATCCAGACTTTATTATGTATGCTGGACTTTTCTGAAGGATGTAAGCCACTGAATGGTTATTTCGTGCTAGTTTATCTCAGAAATCATTTGCCTGTGTAAATATCTTTTATCATATGTGAGTTAAGGGAATGTGTTGAGAGAAGCCATAAAAATAAGTTT

Fln Alignment:

sp_v1.1_unigene13921___NLVRLLGWCHEDNELLLIYDLMPNGSLDKLIFEEDAKHEVLDWHHRCKIVCGVASAMLYLHEECEQQVIHRDLKASNIMLDSDYNARLGDFGLARLIELNKNSYTTTAIAGTPGYIAPEYFHTGRSTTESDVFGFGAVALEVACGRRP----RTEAQLYLVDWVWGLYREGRLLDAADPRL---NEFDKDEMICMLLVGMACSHPNPQERPTMRQVLQILTKDAPPP
A9NVC0_______________NLVQLRGWCRRHTQLFIVYDYMPNGSLDKLIFGNPTT--VLPWHRRYAILKGVAAGLLYLHEQWEKRVVHRDIKSSNVLLDSELNGRLGDFGLARLYDHAENP-ETTHVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGKGGYDVGEMEKVLKLGLLCSHPEPESRLGMRHVCQILDGEAPIP

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
279		75		25	0.996473
662		80		20	0.995493
663		80	20		0.995493
664	80		20		0.995493
668	80	20			0.995493
669	20			80	0.995493
670		20	80		0.995493
671		80		20	0.995493
673	20	80			0.995493
702		80		20	0.995493
717	87	12			0.992554
719	87		12		0.992554
724	87	12			0.992554
961		90	10		0.90298
963	90	10			0.90298
964		10	90		0.90298
965	90			10	0.90298
966	90			10	0.90298
967	90		10		0.90298
970	90			10	0.90298
971	90		10		0.90298
975		10	90		0.90298
976			90	10	0.90298
977		10		90	0.90298
978	10		90		0.90298
1218		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain