SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13913

Length: 319 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene13913
ATGGGGGCATCAAAGGGAGTGAGAGAGAGCCAAGATCTCGAGCCTCTTCCGATTCACAAGTTCTCTTTCTCGTAGTACCTACTTTGAGTGCTTACTTCTTTAGTTCATGCTGTAATTCAAACGGAGCCCCTGTGGATCATTTTCAAGAGAGACATGGTCATCCAGTTAAAGGAGGAGCTGATCATGAACAGTTACAAGACAATCGACGGAAGGGGTGTCAATGTCCACATTGCAAACGGGCCCTGTATCACTGTCCAGTATGTAAGTCACATCATCATCCATGGCATTCATGTTCATGACTGTAAGCCTGCAGGAATGC

Ace file of the UniGene sp_v1.1_unigene13913

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectase lyase n=2 Tax=Prunus persica RepID=D4NXR8_PRUPE	-	-	3.0e-23	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	pectate lyase	-	-	3.04315e-26	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectate lyase.	EC:4.2.2.2	-	3.04315e-26	94%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040		3.04315e-26	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	pectate lyase activity	GO:0030570	Molecular Function	3.04315e-26	94%
Blast2go	endomembrane system	GO:0012505	Cellular Component	3.04315e-26	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 218 aas, your sequence is shorter than subject: 106 - 426

Fln protein: MGASKGVRESQDLEPLPIHKFSFS*YLL*VLTSLVHAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPAGM

Protein Length: 107

Fln nts: ATGGGGGCATCAAAGGGAGTGAGAGAGAGCCAAGATCTCGAGCCTCTTCCGATTCACAAGTTCTCTTTCTCGTAGTACCTACTTTGAGTGCTTACTTCTTTAGTTCATGCTGTAATTCAAACGGAGCCCCTGTGGATCATTTTCAAGAGAGACATGGTCATCCAGTTAAAGGAGGAGCTGATCATGAACAGTTACAAGACAATCGACGGAAGGGGTGTCAATGTCCACATTGCAAACGGGCCCTGTATCACTGTCCAGTATGTAAGTCACATCATCATCCATGGCATTCATGTTCATGACTGTAAGCCTGCAGGAATGC

Fln Alignment:

sp_v1.1_unigene13913___HAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSXXXXXXXXXXDCKPAG
B8LQ36_______________HAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain