SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13903

Length: 1768 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13903

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative quinone-oxidoreductase homolog, chloroplastic n=2 Tax=Arabidopsis RepID=QORH_ARATH	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	77%
Blast2go	vacuole	GO:0005773	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%
Blast2go	plastid inner membrane	GO:0009528	Cellular Component	77%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	77%
Blast2go	GroES-like	IPR011032	-	77%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	77%
Blast2go	Alcohol dehydrogenase GroES-like	IPR013154	-	77%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD48

Fln msg:

Fln protein: MQMAGKVMKAVQYSGYGGGAAALQYVDAPIPTPKKGDLLIKLEATGLNPVDWKIQKGELRPLVPSKFPFIPAVDIAGEVVSVGPGVNDFTTGDKIVTRLSLRSGGGLAEYAVVPIKTTVKRPPGVSAENGAGLPTAALTALQAIRDSAGVKLDGSGKEMNLLITAASGGVGHYAVQIAKLGRAHVTATCGARNVSLVKELGADEVLDYKTPEGAALKSPSGRMYDAVIHCTSNIPWSTFQPNLSPNGKVIDITPTFTSLATTFVKKLTLSSQQIVPLIVSANSNDLALMVNLVNEGKVKTIIDSKYPMDKAADAWAKSMDGHATGKIVVTFGE*

Protein Length: 335

Fln nts: ATGGGGCTGAAAGTCGTCTATAGCGTTTAGTTTATTTTGAAATATGTGTATGAATGCTCAAACTGAAACGAAATGAAGAGCTCTGAAAGTCTTATCTCACCGTGTTGACCTCTGAAAGTCTTTTGCGTTTATCCCACCGATTTTGATTCTATACCCAAGTAGATAAATTAATGCATCTGTATCAGGCGGCTGAACAAATTCTGAGATCCCATTTTAACTGGCACGTACCATTATCCATGGTTTTCTAAATTCAATACCTGCAAGCTAATTCTATTTTATGTAAGAAAATACCAGTGACAACTTTTCGAAATTGTTCGTTGAATTTGACGGAAATCTCGCTTAATTCTCA_-_ATGCAAATGGCTGGGAAAGTCATGAAGGCTGTTCAGTACAGTGGATACGGGGGAGGAGCCGCAGCTCTCCAGTATGTGGATGCTCCAATCCCCACTCCAAAGAAAGGTGATCTGTTGATAAAGTTGGAGGCAACTGGCCTGAATCCAGTAGATTGGAAAATACAAAAGGGAGAGCTTCGTCCTCTCGTTCCATCAAAATTTCCTTTTATCCCTGCGGTGGATATTGCTGGTGAGGTTGTGTCAGTGGGACCTGGAGTCAATGATTTTACAACAGGTGACAAAATTGTGACCAGGCTCAGCCTAAGAAGTGGAGGTGGCCTTGCTGAATATGCTGTTGTACCGATCAAGACAACTGTGAAGAGACCTCCAGGGGTTTCTGCTGAAAATGGTGCGGGCTTGCCTACAGCTGCTTTGACTGCATTGCAAGCAATCCGGGATTCTGCAGGTGTTAAGCTTGATGGAAGTGGGAAGGAAATGAATCTACTTATTACAGCTGCTTCAGGAGGGGTTGGACATTATGCTGTGCAGATAGCAAAGCTTGGCAGAGCACATGTTACTGCCACTTGTGGAGCCCGCAATGTTAGCCTAGTTAAGGAATTAGGAGCTGATGAGGTCTTGGACTACAAAACACCGGAAGGTGCAGCCTTAAAGAGTCCTTCAGGGCGCATGTACGATGCTGTGATTCATTGTACTTCCAACATACCATGGTCAACATTCCAACCTAATCTTAGTCCTAATGGCAAAGTGATAGATATCACCCCAACTTTTACGTCATTGGCTACTACTTTTGTAAAGAAACTGACTCTGTCCAGTCAGCAAATTGTGCCATTGATAGTTTCAGCAAACAGCAATGACTTGGCGTTAATGGTaAACTTGGTCAATGAGGGAAAAGTGAAAACcATTATtGATTCgAAATATCCCaTGGAcAAGGCAGCAGATGCATGGGCTAAGAGCATGGACGGTCATGCCACAGGAAAGATTGTAGTAACATTTGGAGAGTAG___AATTTGTGGTGTAAATTCTTGGACATGTATAGACGTTTAGATTGATGTATAAAATAGTGCCTGGGCAGTAATCATAGAGGGTCGTGCCACTAGAAAGATTGTAGTAATATATGGCGAAGAGCTTGTGGATGACGTGAGTTCTTAGAAATCTGAACATTGCTATTGTGGTGATAAGCGCATTTTAGAGTATAGGATATGATGAATAAGCTTTATCAATGTATGGATAATTAGTCTATATTGGAACATATTTGGTCGCCTCTTATGTTTCACCAGACGGGTAGTCTATCTGAAGTATTGTAACCATCATCTTCCACAGCGACCATCTTTGTGACAGTGGAGAATCTACGAATTATCTTCATTGGTGAAGCATTTGTATTTATTTCATACTTATATGATAATAATCTTGTCTTGATAGTT

Fln Alignment:

sp_v1.1_unigene13903___MQMAGKVMKAVQYSGYGGGAAALQYVDAPIPTPKKGDLLIKLEATGLNPVDWKIQKGELRPLVPSKFPFIPAVDIAGEVVSVGPGVNDFTTGDKIVTRLSLRSGGGLAEYAVVPIKTTVKRPPGVSAENXXXXXXXXXXXXXXIRDSAGVKLDGSGKEMNLLITAASGGVGHYAVQIAKLGRAHVTATCGARNVSLVKELGADEVLDYKTPEGAALKSPSGRMYDAVIHCTSNIPWSTFQPNLSPNGKVIDITPTFTSLATTFVKKLTLSSQQIVPLIVSANSNDLALMVNLVNEGKVKTIIDSKYPMDKAADAWAKSMDGHATGKIVVTFGE
D5AD48_______________MQMAGKLMKAVQYSGYGGGAGALQYVDAPIPTPKKGELLIKLEATGLNPVDWKIQKGQLRPLLPSKFPFIPAVDVAGEVVSVGPGVNDFTTGDKVVSMLGSRNGGGLAEYAVASIKTTVKRPLGVSAENGASLPIAALTALQAIRDSAGVKLDGSGKEMNLLITAASGGVGHYAVQIAKLGRAHVTATCGARNVSLIKELGADEVLDYKTPEGAALKSPSGRKYDAVIHCTSNIPWSIFQPNLSPNGKVIDFTPNFMSLASTFVKKLTLSSQQIVPFIVSGNSNDLAFMVNLVNEGKVKTIIDSKYPLEKAADAWAKSMDGHATGKIVVTFGE

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
47			33	66	0.997452
49			33	66	0.997452
389	40			60	1.0
406	60	40			1.0
433		14		85	0.993533
450	66		33		1.0
512		75		25	0.996473
635	14		14		0.984337
636			85	14	0.993533
694	33			66	1.0
714		83	16		0.994512
872		33		66	0.997452
966	33			66	0.997452
1022		66		33	0.997452
1108		85		14	0.993533
1160	33	66			1.0
1163	33			66	1.0
1181	33		66		1.0
1192		66	33		1.0
1193	66		33		1.0
1202	33			66	1.0
1220		57		42	1.0
1235	42		57		1.0
1250	42	57			1.0
1256	42	57			1.0
1262	42	57			1.0
1272		50	50		1.0
1277	50		50		1.0
1292	60		40		1.0
1298	40			60	1.0
1310		66		33	1.0
1329	90		10		0.90298
1342			11	88	0.923564
1354	88		11		0.923564
1360		11	88		0.923564
1366	90	10			0.90298
1380		10		90	0.90298
1537	50		50		1.0
1627	50	50			1.0
1629	50		50		1.0
1662		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain