SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13893

Length: 2509 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13893
CCAATTTTTAGATGAAATTATTGAAGACTTCCTGGAATGTGAGAAGGATATCTTGCAGTGTGATCAGATTGAAGAAGACAAAGTGAGAGCTGTCACTAGATTGCTGATGCTGCCAACACGTGCAGAGTCAATCTTTTGGAGAAGAAAGCGTGCTACTGGTCCTGGAAATGTAAAATATGCAGGATTGGTCATCTCCCATCAAGACCGTTTTCTTAATAATATTGGACTGTTAAAATCTGTTTATTCTTTCTATTCCACCAATTCGAGCTCCACCGATTGATGTTATCTGCTCAGACAGGGGTTTTGCATATCAGAATGCAGAAGAACTTCATCAACCATGGATGAAAAAACTACTTGTTGGTTTTGCTCGTACATCTGAGTTCAATGGTCCTACAAAACCTCAGGATCCTCATTATTTGATTAAAGAAATAGACTCAGATTTACTCTCTGAGAAGCCAGTTCTTCAGCTTACAAATCGAATATTCGGATCTTCACCTCCTTTGCAAAGCTTTGATCTTGCAAAGATGCTTACGGATTCTGGGAAGCTACAGACATTAGATGCTTTGCTGAAACGCCTCCGTGCTGAAAACCATCGAATTCTCCTGTTTGCACAAATGACTAAAATGCTCAATATTCTTGAGGACTACATGAATTACAGGAAGTACAAATATCTTCGTTTGGATGGATCTTCAACCATAATGGATCGCCGTGACATGGTCAGGGACTTCCAAAACAAGCAAGATATATTTGTCTTTTTGTTGAGCACAAGAGCTGGGGGCCTGGGAATCAATCTCACAGCTGCTGATACTGTTATATTTTATGAAAGCGATTGGAATCCAACTTTGGACTTACAGGCCATGGACAGGGCACATCGGCTTGGACAAACGAAGGAGGTCACAGTGTACAGACTGATTTGTAAGGAGACTGTTGAAGAGAAAATTTTGCAGAGAGCTAGTCAAAAAAATACTGTTCAGCAACTTGTTATGACGGGGGGTCATGCACAAGGTGATTTACTGCATGCTGAAGATGTCGTTTCCTTGTTGCTGGATGATGCTCAGCTGGAACAGAAGATAAAGGAGCAAGGACCTATGCAGGGTAAGGATAGGCAGAGGAAGAGAAAGGGCATGTCCAGTGCAGCAAAAGCTATTCGGATCAATGCTGAAGGTGATGCTTATTTAGAGGATTCTGCAGTAGCACAAGAGAATGCTATTGAACTAGATACTGGAAAGGCAGGAACTAGAAAGAGAAAATTTAATTCGGAGAGGAAGCCATCCTCAAAACCTAAAAATGCACAGAAAACTATGAAGGATTCAGAGGTACCTCTAGAACAAATTGATCCTAAACATTTGAGAATAGATGGCGACTCTAAACAGAAGGGAAGACCTGGGAAGAGAATGAAGAAGAGTGCAAATGATGTCTCACAACCAGGCAGACATGTTGAGAAAATTGGAGAGTCTGCAGAATCCCCTTCTTTTTTTAATACAGGTAATATTGATGCCAATGCAGACATTGAAGAAGAAAGTTCTTCTCGCAGCTGGTCTTCTCCAAGATAGAAGCCCATTTGCTGGATTTCTCTTCAACCGGTATTGCAATGCTATTGGTACTAGATGATCACATTGGCCTTCGTCTTATCCAACAAGAAGCATCTGATGGCAAAAATTTGTACATGTAGGATCAGCAGTAGAAAGTGTTAGACTGCTATGATTCATATTCATTCTACCTTTTGGTCCTTTGAAACTACTATGTAGTGATACACATGCCCTATTCTCAAGGTGCTTAAGCTAAAGTAACTCCCATGCTCTCAGACTCGAATATTGCACAGAAAACTTGAAGCAGGATATATTTTGGCATATGAGAGGTTTGAGAGCTATCTGAGGCCGGTTCAATGTATTTTATGTTCTGAGATGAATGAAATCTTCCCACCATGCATCAAGATGTGTGGGTGTACATGTCGTACTCGGTGCTATTCATACCATTCATTTTGGCAACCCCTCTCTCCATGGTTTTTGCAAACACATTTTTAGACTGTGTTGCACTTTTCTATGTATACCCAATTCTGGCATCTTCATTGTGGTGGGTTGCAGCTCCAGGCTGAGAATCAGTCTTTATTGTCTTCCATTTAGATTTTAGTTATTTCTGCTGGTCCACATATCTTTTAGTAGTAGCCTATACTAGTGTATGCTGCCAACTCCAAGAACAGTTATGTATTGATGCTAACTTTCATAAGCATCTTCACCTCCTTTTATGACGCCTTTTCTTTTAGCATTTTATTAGCACAACAATCTTTAATTGTTGGGTACAGAGAGCAGGAAAAGACCCGTGCATGTTATTTTTTTGGTCAGGCCAACGTCCCAACTGAGTTTGCATTGTAAGTTATGGCAGTTGCTTCAAGCTGTTATATCCCCAAGTATGTGCTGTAGGTGACTTCTTTGTATAGCTCCTTTTGTGATAACTTTATTATTATTTTATAATCTATCACAGATGAATTTTTGTATCTCATTTACAACTT

Ace file of the UniGene sp_v1.1_unigene13893

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CHR929; chromatin remodeling complex subunit; K11665 DNA helicase INO80 [EC:3.6.1.-]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	chromatin remodeling complex subunit	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	68%

Source	KEGGs	Term	Identity
AutoFact	Purine metabolism	00230	68%
AutoFact	Lipopolysaccharide biosynthesis	00540	68%
AutoFact	Folate biosynthesis	00790	68%
AutoFact	Metabolic pathways	01100	68%

Source	GOs	Term	Type	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	helicase activity	GO:0004386	Molecular Function	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	73%
Blast2go	transferase activity	GO:0016740	Molecular Function	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZB1

Fln msg: your sequence is longer than subject: 404 - 154

Fln protein: MKKLLVGFARTSEFNGPTKPQDPHYLIKEIDSDLLSEKPVLQLTNRIFGSSPPLQSFDLAKMLTDSGKLQTLDALLKRLRAENHRILLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQNKQDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKEVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHAQGDLLHAEDVVSLLLDDAQLEQKIKEQGPMQGKDRQRKRKGMSSAAKAIRINAEGDAYLEDSAVAQENAIELDTGKAGTRKRKFNSERKPSSKPKNAQKTMKDSEVPLEQIDPKHLRIDGDSKQKGRPGKRMKKSANDVSQPGRHVEKIGESAESPSFFNTGNIDANADIEEESSSRSWSSPR*

Protein Length: 405

Fln nts: CCAATTTTTAGATGAAATTATTGAAGACTTCCTGGAATGTGAGAAGGATATCTTGCAGTGTGATCAGATTGAAGAAGACAAAGTGAGAGCTGTCACTAGATTGCTGATGCTGCCAACACGTGCAGAGTCAATCTTTTGGAGAAGAAAGCGTGCTACTGGTCCTGGAAATGTAAAATATGCAGGATTGGTCATCTCCCATCAAGACCGTTTTCTTAATAATATTGGACTGTTAAAATCTGTTTATTCTTTCTATTCCACCAATTCGAGCTCCACCGATTGATGTTATCTGCTCAGACAGGGGTTTTGCATATCAGAATGCAGAAGAACTTCATCAACCATGG_-_ATGAAAAAACTACTTGTTGGTTTTGCTCGTACATCTGAGTTCAATGGTCCTACAAAACCTCAGGATCCTCATTATTTGATTAAAGAAATAGACTCAGATTTACTCTCTGAGAAGCCAGTTCTTCAGCTTACAAATCGAATATTCGGATCTTCACCTCCTTTGCAAAGCTTTGATCTTGCAAAGATGCTTACGGATTCTGGGAAGCTACAGACATTAGATGCTTTGCTGAAACGCCTCCGTGCTGAAAACCATCGAATTCTCCTGTTTGCACAAATGACTAAAATGCTCAATATTCTTGAGGACTACATGAATTACAGGAAGTACAAATATCTTCGTTTGGATGGATCTTCAACCATAATGGATCGCCGTGACATGGTCAGGGACTTCCAAAACAAGCAAGATATATTTGTCTTTTTGTTGAGCACAAGAGCTGGGGGCCTGGGAATCAATCTCACAGCTGCTGATACTGTTATATTTTATGAAAGCGATTGGAATCCAACTTTGGACTTACAGGCCATGGACAGGGCACATCGGCTTGGACAAACGAAGGAGGTCACAGTGTACAGACTGATTTGTAAGGAGACTGTTGAAGAGAAAATTTTGCAGAGAGCTAGTCAAAAAAATACTGTTCAGCAACTTGTTATGACGGGGGGTCATGCACAAGGTGATTTACTGCATGCTGAAGATGTCGTTTCCTTGTTGCTGGATGATGCTCAGCTGGAACAGAAGATAAAGGAGCAAGGACCTATGCAGGGTAAGGATAGGCAGAGGAAGAGAAAGGGCATGTCCAGTGCAGCAAAAGCTATTCGGATCAATGCTGAAGGTGATGCTTATTTAGAGGATTCTGCAGTAGCACAAGAGAATGCTATTGAACTAGATACTGGAAAGGCAGGAACTAGAAAGAGAAAATTTAATTCGGAGAGGAAGCCATCCTCAAAACCTAAAAATGCACAGAAAACTATGAAGGATTCAGAGGTACCTCTAGAACAAATTGATCCTAAACATTTGAGAATAGATGGCGACTCTAAACAGAAGGGAAGACCTGGGAAGAGAATGAAGAAGAGTGCAAATGATGTCTCACAACCAGGCAGACATGTTGAGAAAATTGGAGAGTCTGCAGAATCCCCTTCTTTTTTTAATACAGGTAATATTGATGCCAATGCAGACATTGAAGAAGAAAGTTCTTCTCGCAGCTGGTCTTCTCCAAGATAG___AAGCCCATTTGCTGGATTTCTCTTCAACCGGTATTGCAATGCTATTGGTACTAGATGATCACATTGGCCTTCGTCTTATCCAACAAGAAGCATCTGATGGCAAAAATTTGTACATGTAGGATCAGCAGTAGAAAGTGTTAGACTGCTATGATTCATATTCATTCTACCTTTTGGTCCTTTGAAACTACTATGTAGTGATACACATGCCCTATTCTCAAGGTGCTTAAGCTAAAGTAACTCCCATGCTCTCAGACTCGAATATTGCACAGAAAACTTGAAGCAGGATATATTTTGGCATATGAGAGGTTTGAGAGCTATCTGAGGCCGGTTCAATGTATTTTATGTTCTGAGATGAATGAAATCTTCCCACCATGCATCAAGATGTGTGGGTGTACATGTCGTACTCGGTGCTATTCATACCATTCATTTTGGCAACCCCTCTCTCCATGGTTTTTGCAAACACATTTTTAGACTGTGTTGCACTTTTCTATGTATACCCAATTCTGGCATCTTCATTGTGGTGGGTTGCAGCTCCAGGCTGAGAATCAGTCTTTATTGTCTTCCATTTAGATTTTAGTTATTTCTGCTGGTCCACATATCTTTTAGTAGTAGCCTATACTAGTGTATGCTGCCAACTCCAAGAACAGTTATGTATTGATGCTAACTTTCATAAGCATCTTCACCTCCTTTTATGACGCCTTTTCTTTTAGCATTTTATTAGCACAACAATCTTTAATTGTTGGGTACAGAGAGCAGGAAAAGACCCGTGCATGTTATTTTTTTGGTCAGGCCAACGTCCCAACTGAGTTTGCATTGTAAGTTATGGCAGTTGCTTCAAGCTGTTATATCCCCAAGTATGTGCTGTAGGTGACTTCTTTGTATAGCTCCTTTTGTGATAACTTTATTATTATTTTATAATCTATCACAGATGAATTTTTGTATCTCATTTACAACTT

Fln Alignment:

sp_v1.1_unigene13893___MQGKDRQRKRKGMSSAAKAIRINAEGDAYLEDSAVAQENAIELDTGKAGTRKRKFNSERKPSSKPKNAQKTMKDSEVPLEQIDPKHLRIDGDSKQKGRPGKRMKKSANDVSQPGRHVEKIGESAESPSFFNTGNIDANADIXXXXXXXXXXXPR
A9NZB1_______________MQGKDRQRKRKAISSGAKAIRINAEGDVYLEDPTVAQENVIELDTGKAGTRKRKFNSERKPSSKPKNAQKTIKDSEVPLEQMDPKRLRIDGDSKQKGRPGKRMKKSANDGSQPGRPAEKVAESAESPSFVNTVNIDANVDIEEENSSRSWSSPR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
966	75			12	0.975346
967	12			87	0.992554
989	87		12		0.992554
1649	25	75			0.996473
1668		87	12		0.992554
1669	87		12		0.992554
1812			72	27	1.0
2002	90		10		0.90298
2010			14	85	0.993533
2011	14		85		0.993533
2128		16		83	0.999991
2423			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain