SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13875

Length: 1907 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13875

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dof domain zinc finger DNA-binding protein n=1 Tax=Picea abies RepID=Q14DX9_PICAB	-	-	74%
FL-Next	tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	84%
Blast2go	f-box family protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	72%
Blast2go	DNA binding	GO:0003677	Molecular Function	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, Dof-type	IPR003851	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q14DX9

Fln msg: your sequence is shorter than subject: 377 - 475

Fln protein: QKTVLKKPDKLLPCPRCQSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHSVAASTVSSHYRQVISAASECGLGVRTDDQDSGVDQVMIPCAALPASCVRPLKVAGSRIQVVPVDVLESGASTGTVLNFGSEARNKIQRGGDSDPSIEKSTMESSSGFGKEATAHINQAAPRPQMDPSPNWANGAAGAAFFGGAWSYGWNFPNPAWNAAAAALAPGWPGLSWPMVPGSYFPPPPPPAPAGWGPAPWVSGPWASAAATTASNNPAAADSGSPSLGKRPQSEDGCLWVPKTLRIDDPGEAAKSSIWTTLGLGDKPESAITSGGIFKAFQPKTQGAKDSRKASQALQANPAAFSRSLSFHETS*

Protein Length: 378

Fln nts: GCAGAAGACGGTGTTGAAGAAACCAGACAAGCTTCTGCCGTGCCCAAGATGCCAGAGCATGGATACCAAATTTTGTTATTACAATAACTATAACGTGAATCAGCCGCGTCATTTCTGCAAGAATTGCCAGAGATATTGGACGGCCGGGGGGACGCTCAGGAACGTGCCGGTGGGTGCCGGGCGCCGGAAGAACAAGCATTCCGTAGCGGCGTCCACGGTATCCTCGCATTACCGTCAGGTAATCTCGGCGGCTTCCGAGTGTGGCCTTGGGGTTCGAACCGATGACCAGGACTCTGGCGTCGACCAGGTTATGATCCCCTGTGCCGCGCTGCCTGCGTCCTGTGTGCGGCCGCTCAAGGTCGCGGGTTCGAGGATTCAAGTCGTACCTGTGGATGTATTGGAGTCCGGTGCCTCCACCGGGACTGTGCTCAATTTTGGGTCTGAAGCTCGGAATAAAATACAACGTGGAGGGGATAGCGATCCGAGCATTGAGAAATCGACAATGGAGTCTTCTTCTGGGTTTGGAAAAGAGGCGACTGCTCATATCAATCAAGCAGCCCCTCGGCCACAGATGGATCCGTCACCCAATTGGGCGAATGGGGCTGCTGGGGCTGCGTTTTTTGGAGGTGCCTGGTCATATGGGTGGAATTTTCCAAACCCAGCATGGAATGCCGCTGCTGCTGCTCTTGCCCCTGGTTGGCCCGGTTTGTCTTGGCCCATGGTTCCTGGATCCTACTTTCCTCCGCCTCCTCCTCCTGCTCCTGCCGGATGGGGGCCTGCACCATGGGTTTCTGGACCCTGGGCCTCCGCCGCTGCCACCACTGCTTCCAATAATCCCGCTGCTGCGGATTCTGGGTCTCCATCTCTGGGTAAGAGGCCACAGTCTGAAGATGGGTGTTTGTGGGTTCCCAAGACACTGAGGATTGATGATCCAGGGGAGGCTGCAAAGAGCTCAATTTGGACAACATTAGGCCTAGGGGACAAGCCGGAaTCTGCCATCACTAGTGGGGGGATTTTTAAGGCCTTCCAACCCAAGACACAGGGCGCTAAAGATTCAAGAAAGGCTTCGCAAGCTCTGCAAGCAAATCCTGCTGCCTTTTCAAGATCGTTATCCTTCCATGAGAcCAGCTAA___TTTCATTCAAACAGCCCTATCCAGCAAAATGATGAGTTTGTGCAGAAATACTGGTTTTGATTATAAGAGCAGGGTTCAGACATATACTCATGTTCTTACTGTGGCTTGGGAGGTCCATACTCTGGACTCTGCACTAGCACTAGAAGTAGCAATAACTGGCTTATAATTGAGAGAGCCCTAATAGATTGCCTCTCCCTCCCTTTCATGCTCCGGGGAAGGTGTTAGCAGAACAAAATCATAGAGAGAGCCTATATGAAGAGAGATTGCCTGTTAATGCTGTTCAATCTACCCTTTAAAGTATTTTCTTCCTGATTGCTCACAAGAGCTGATTGGGAGATATACAATCTGTATATGATTACAATTTTTGCTTCCTTTTGGGAGTCTATGCTTAACTTTTCTATTTTTGGGGAGTCTAAATTGGATGTAAAAATTATGGGTATTGATGATGAATGCAGTTACCTCAAAAGGTGACAGTAACTAGGACTAGTCTTAAGCAGAGCCAAACTTGTAAATTAGATTAGACATAAGCACAGGTGAGGTCCGAAGAGTTTTTCTTCAACGGCCTCACCGGACTCAGGAGCATATTGTGCAGAAGACTTTGGACCAGAGCATATTGTGCAGAAGACTTTGGACCAAGTCGAGTGTATATATATATTACATTTGTGTCTCTGTAAGATGTATAAAGATCCAGACCTGTTAACCTTGTATAGCTTGTCCTCCAATGAGTGTTAAAGAGCGAGTGATCTTTTTAATGGACACAAAATTTCGAACTTTG

Fln Alignment:

sp_v1.1_unigene13875___QKTVLKKPDKLLPCPRCQSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHSVAASTVSSHYRQVISAASECGLGVRTDDQDSGVDQVMIPCAALPASCVRPLKVAGSRIQVVPVDVLESGASTGTVLNFGSEARNKIQRGGDSDPSIEKSTMESSSGFGKEATAHINQAAPRPQMDPSPXXXXXXXXXXXXXXXXSYGWNFXXXXXXXXXXXXXXXXXXXSWPMVPGSYF--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGSPSLGKRPQSEDGCLWVPKTLRIDDPGEAAKSSIWTTLGLGDKPESAITSGGIFKAFQPKTQGAKDSRKASQALQANPAAFSRSLSFHETS
Q14DX9_______________QKTVLKKPDKLLPCPRCQSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHSVAASTISSHYRQVISAASECGLGVRTDDQESGVDQVMIPCAALPASCVRPLKVAGSRIQVVPMDVLDSAASTGTVLNFGSEVRNKIQLGGDSDPSIEKSTMESSSGSGKEAAGHMNPVAPRPQMDPPPNWANGAAGAAYFGGAWSYGWNF-GNPAWNAAAALPPGWPGFSWPMVPGSYFGPSPPPPPGWGPGPWVSGPWAAAAVAASNNPTAAAVASNNPTAVDSGSPTLGKRPQSEDGCLWVPKTLRIDDPGEAAKSSIWTTLGLGDKPESAITSGGIFKAFQPKTQGAKDSRKASQALQANPAAFSRSISFHESS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1103	25			75	0.996473
1105		75	25		0.996473
1106	75		25		0.996473
1107	75		25		0.996473
1129	75		25		0.996473
1141	75		25		0.996473
1154	50			50	1.0
1198			25	75	0.996473
1225	10	90			0.90298
1291	90		10		0.90298
1292		90	10		0.90298
1293			10	90	0.90298
1702		47		52	1.0
1838	50		50		1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
674	685	GCT GCT GCT GCT	12
746	757	CCT CCT CCT CCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain