SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13870

Length: 1019 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13870

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to Protein kinase-like n=1 Tax=Vitis vinifera RepID=UPI0001986357	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein kinase-like	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL04

Fln msg: Distance to subject end: 354 aas, your sequence is shorter than subject: 303 - 657

Fln protein: MFLAYEHIKKVGRGPIKKVGCALAIRKLQDIGSSTHGSPSSPGVPRILWNHVRFHHSQYKKSYWSRIDDRYGSVQESARRAHSIPILSGFSKLRYNLCRPHNSKGFSAMPASVGMTYHAQAAWRRLSLLCCYGGPTFPAISKIARAVSLACVRSHLTPRILAVIIGEASWAHNRLAESQELYSSVPLNSQVINRHAIFTSSIWSIVEGLILVIRALYLMTLFTPAIVMAPFASMFEGRYRERWLQLVHGSLEKAGAAFIKWGQWAATRPDLFPRDLCKELAKLHTKAPAHKFSYTQETIERAF

Protein Length: 304

Fln nts: CAGCAATTATGTTCTAATGGGATCTTCAGACTAAGGCCGATCAGTTACATTCAACTGAATTCAGATCAAACACCTCCGTTAACAACAAGAAGGATGATAAATATGTAACA_-_ATGTTTTTAGCATATGAACACATTAAGAAAGTAGGACGTGGACCTATCAAGAAAGTAGGTTGTGCTTTGGCCATTCGAAAGTTGCAAGATATAGGAAGCAGCACACATGGGAGCCCATCTTCGCCCGGTGTACCTAGAATATTGTGGAACCATGTCAGATTTCATCATTCACAGTACAAGAAGTCCTACTGGAGTAGGATAGATGACAGGTATGGTTCTGTCCAGGAAAGTGCTAGAAGGGCACATTCTATCCCAATCCTTTCAGGATTCTCCAAACTCAGGTATAATCTTTGTAGGCCACATAATTCCAAAGGTTTTTCTGCGATGCCAGCAAGTGTTGGCATGACGTACCATGCTCAAGCGGCATGGAGGAGACTCTCGCTGTTATGCTGCTATGGTGGTCCTACATTTCCAGCAATTAGTAAGATTGCTCGTGCTGTGAGCTTGGCTTGTGTTAGATCACATCTCACCCCTCGAATATTGGCTGTTATTATTGGGGAGGCTTCATGGGCACATAATAGGTTGGCTGAATCACAAGAATTGTATTCTAGTGTCCCTCTGAACAGTCAAGTAATTAATAGACATGCCATTTTCACATCATCTATCTGGTCAATTGTGGAGGGCCTTATTTTGGTGATAAGGGCACTTTATTTGATGACACTATTCACACCAGCAATTGTGATGGCTCCGTTTGCATCTATGTTTGAGGGAAGGTATAGAGAAAGATGGCTGCAGCTTGTTCATGGATCTCTGGAGAAGGCAGGGGCTGCCTTTATTAAGTGGGGTCAGTGGGCAGCCACACGTCCAGATCTTTTCCCCAGAGATTTGTGTAAGGAGCTCGCAAAACTGCACACAAAGGCACCGGCACATAAATTTTCATACACACAGGAAACTATTGAAAGGGCTTTT

Fln Alignment:

sp_v1.1_unigene13870___MFLAYEHIKKVGRGPIKKVGCALAIRKLQDIXXXXXXXXXXXXXXRILWNHVRFHHSQYKKSYWSRIDDRYGSVQESARRAHSIPILSGFSKLRYNLCRPHNSKGFSAMPASVGMTYHAQAAWRRLSLLCCYGGPTFPAISKIARAVSLACVRSHLTPRILAVIIGEASWAHNRLAESQELYSSVPLNSQVINRHAIFTSSIWSIVEGLILVIRALYLMTLFTPAIVMAPFASMFEGRYRERWLQLVHGSLEKAGAAFIKWGQWAATRPDLFPRDLCKELAKLHTKAPAHKFSYTQETIERAF
B8LL04_______________MFLAYERIKKVGRGPIKKVGCALAIRKLQDIGSSTHGSPSSPGVPRILWNHVRFHHSQNKKSYWSRIDDKYGSVQESARNAHSIPMLSGFSKLRYDLCRPHNSKGFSMIPASVGMTYHAQTAWRRLSLLCCYGGPTFPAISKIARAVSLACVRSHLTPRILAVIIGEASWAHNSWAESQELYPSVPLNSQVINRHAIFTSSIWSFLEGLILVIRALYLITLFTPAIVMAPLASMFEGRYRERWLQLVHRSLEKAGAAFIKWGQWAATRPDLFPRDLCKELAKLHTKAPAHKFSYTQHTIEKAF

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
88	66	33			0.997452
90	66			33	0.997452
91	50	50			1.0
94		25	75		0.996473
95	75		25		0.996473
96		25		75	0.996473
97		25	75		0.996473
98	75			25	0.996473
99		25		75	0.996473
100	50	25	25		0.995533
101	50		25	25	0.995533
102	50	25		25	0.995533
103			25	75	0.996473
104	50		50		1.0
107		25	75		0.996473
108	25			75	0.996473
109	50	50			1.0
110	75			25	0.996473
112	75			25	0.996473
149	75		25		0.996473
154			75	25	0.996473
155	75			25	0.996473
157		80	20		0.995493
158		20	20	60	0.99255
160			20	80	0.995493
161		80		20	0.995493
162	60		40		1.0
163	80			20	0.995493
165	80			20	0.995493
166	60	20	20		0.99255
167	80	20			0.995493
168		20	60	20	0.99255
173		40		60	1.0
174		20		80	0.995493
177		25	75		0.996473
372		85	14		0.993533
374			14	85	0.993533
376		85	14		0.993533
378		16	83		0.994512
379		16	83		0.994512
380	83			16	0.994512
382			16	83	0.994512
385		83		16	0.994512
388	83	16			0.994512
389	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain