SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13783

Length: 1294 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13783 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Type I inositol polyphosphate 5-phosphatase, putative n=3 Tax=rosids RepID=B9SFH8_RICCO	-	-	5.0e-34	49%
FL-Next	sp=Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	endonuclease exonuclease phosphatase family protein	-	-	9.21606e-34	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	9.21606e-34	64%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	9.21606e-34	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Endonuclease/exonuclease/phosphatase	IPR005135	-	9.21606e-34	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9LR47

Fln msg: Distance to subject end: 459 aas, your sequence is shorter than subject: 150 - 617

Fln protein: MTVMDDHKNKYSWRKLLVRKWMNMKGKEDENQGGENFEDHYESFFGRRKSCSDNESSCSRKSLNDNFSPVAMEPEVSQVTETRDFRIFVATWNVGGKAPHKGLNLEEWLRGSAPADIYILGFQEIVPLNAGNILGAENNGHAAKWLALIN

Protein Length: 151

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTGACTGCCCAACAATATGCAGCAGAGGGTCAAATGAATATCAAATTCCAAGTTGATTAGGATCACCGAATTCCTAGTTGATGAAGCGAAAACCCAAAAGCTGTAACTAGCCTCATGGTCTCATGCAATGCCAAGTACAGCCCTAGGTGTTAAAGTTCTCGTTGGCCAATATCTCCTTTCCTCTGTCTGTATAGATATTCTTTATTCTGACCACCTTCTATTAGTTTTGTAAGTGGGGTCCTTCCTCAGGTTTCATGAAGGCACTTGACTTGCATTGCACTGTTTGTTATGTAACAAATAAATAAGCTTGGTGGCAGAGACAGACACCCTCCAGTCTCTGTAAACGGTCTGTTTCACCCCTTTTCACAAGTACAATCCCTGGAATAATTGGGTTTAAAACTGTCCCAACTTCTGTTAAAATAACATTGAATCAACCCACCACATTCTTTCTTTCTCTTGATCTGACCCATCAAGGTATGTCATAGCAATGAGGGGTTCTTGGTATTGGATAAAGAGCTTTGCTATCATTGCAGTGGCTCTTCTTCTCAGATATATGCAGCCATTTTTAAATTCTAGTAGTTATGCCCGTTGTTTGTATTGAGTCTATGCTGTTGTTTTACTCAATGCCGCCATTTTTATTGAGCCTCTAGTATTGGTTACTGGATTCCATATCCTGTTTGCCTGATACCTATGAATTATTTTCCTGAAGGAAATGACTGCCATTCGGTTTCTATAAAGAAGTGAACTCATTCCTTGTTTGTCTGATAGAATTTTTTGAATCACAAATACCAAGGTTTAGCTTTGTCAGTACGTTG_-_ATGACAGTTATGGATGACCATAAAAACAAGTACTCATGGCGTAAGTTGCTGGTCAGGAAGTGGATGAATATGAAGGGAAAAGAGGACGAGAACCAAGGTGGTGAGAATTTTGAAGACCACTATGAATCCTTCTTTGGGAGACGAAAGAGCTGCTCAGATAACGAGTCCTCGTGCTCAAGAAAAAGCTTGAATGATAATTTCAGTCCTGTAGCAATGGAGCCAGAGGTGTCCCAAGTCACAGAAACTCGCGACTTTAGGATATTTGTGGCAACATGGAATGTGGGAGGCAAAGCACCCCACAAAGGCCTGAATTTGGAGGAATGGCTGCGTGGATCAGCTCCAGCTGATATCTACATTTTGGGGTTTCAAGAAATTGTGCCTTTAAATGCAGGAAACATTTTAGGGGCAGAGAACAATGGCCATGCTGCAAAATGGCTTGCCCTTATTAATCA

Fln Alignment:

sp_v1.1_unigene13783___NKYSWRKLLVRKWMNMKGKEDENQGGE----NFEDHYESFFGRRKSCSDNESSCSRKSLNDNFSPVA----MEPEVSQVTETRDFRIFVATWNVGGKAPHKGLNLEEWLRGSAPADIYILGFQEIVPLNAGNILGAENNGHAAKWLALI
Q9LR47_______________NKLAWSKKMVRKWFNIKSKTEEFQADDPSSAGIEVEHRSSFSAEKAPSTIKNTKTEK-LSKNWEQQARQRRMNYENPRIIDVQNYSIFVATWNVAGRSPPSDLNLDEWLHSSAPADIYVLGFQEIVPLNAGNVLGAEDNGPAQKWLSLI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
618		33	66		0.997452
1162			88	11	0.923564
1192		71		28	1.0
1193			28	71	1.0
1199	71	28			1.0
1200	28			71	1.0
1201			28	71	1.0
1203		28	71		1.0
1204	28		71		1.0
1205	28			71	1.0
1207	71		28		1.0
1212			28	71	1.0
1214	71	28			1.0
1215			28	71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain