SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13778

Length: 929 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13778 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cationic amino acid transporter n=1 Tax=Populus trichocarpa RepID=B9IPU4_POPTR	-	-	5.0e-34	67%
FL-Next	tr=Putative uncharacterized protein Sb01g013100; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	50%
Blast2go	cationic amino acid transporter	-	-	5.36561e-35	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Catalase.	EC:1.11.1.6	-	5.36561e-35	80%

Source	KEGGs	Term	e value	Identity
Blast2go	Tryptophan metabolism	00380	5.36561e-35	80%
Blast2go	Methane metabolism	00680	5.36561e-35	80%
Blast2go	Metabolic pathways	01100	5.36561e-35	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	5.36561e-35	80%
Blast2go	hydrogen peroxide catabolic process	GO:0042744	Biological Process	5.36561e-35	80%
Blast2go	response to light stimulus	GO:0009416	Biological Process	5.36561e-35	80%
Blast2go	response to cold	GO:0009409	Biological Process	5.36561e-35	80%
Blast2go	cellular response to sulfate starvation	GO:0009970	Biological Process	5.36561e-35	80%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	5.36561e-35	80%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	5.36561e-35	80%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	5.36561e-35	80%
Blast2go	amino acid transport	GO:0006865	Biological Process	5.36561e-35	80%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	5.36561e-35	80%
Blast2go	basic amino acid transmembrane transporter activity	GO:0015174	Molecular Function	5.36561e-35	80%
Blast2go	catalase activity	GO:0004096	Molecular Function	5.36561e-35	80%
Blast2go	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	5.36561e-35	80%
Blast2go	cell wall	GO:0005618	Cellular Component	5.36561e-35	80%
Blast2go	peroxisome	GO:0005777	Cellular Component	5.36561e-35	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.36561e-35	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	5.36561e-35	80%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	5.36561e-35	80%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	5.36561e-35	80%
Blast2go	vacuole	GO:0005773	Cellular Component	5.36561e-35	80%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	5.36561e-35	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.36561e-35	80%
Blast2go	apoplast	GO:0048046	Cellular Component	5.36561e-35	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid/polyamine transporter I	IPR002293	-	5.36561e-35	80%
Blast2go	Cationic amino acid transporter	IPR015606	-	5.36561e-35	80%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
800	66	33			1.0
801	77		22		0.999999
802	33			66	1.0
803		22		77	0.999999
849			85	14	0.993533
850		85	14		0.993533
851	14			85	0.993533
853		85		14	0.993533
854	85		14		0.993533
856		16	83		0.994512
857	16	83			0.994512
859		20		80	0.995493
860		20		80	0.995493
862	20	80			0.995493
863			20	80	0.995493
864	80		20		0.995493
865			80	20	0.995493
866		20		80	0.995493
869	80	20			0.995493
870	80		20		0.995493
873			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain