SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13768

Length: 1058 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13768

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PIN-like auxin efflux carrier n=1 Tax=Picea abies RepID=B5TXD0_PICAB	-	-	87%
FL-Next	tr=PIN-like auxin efflux carrier; Picea abies (Norway spruce) (Picea excelsa).	-	-	87%
Blast2go	auxin efflux carrier component	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	91%
Blast2go	auxin polar transport	GO:0009926	Biological Process	91%
Blast2go	transmembrane transport	GO:0055085	Biological Process	91%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	91%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	91%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	91%
Blast2go	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	91%
Blast2go	auxin:hydrogen symporter activity	GO:0009672	Molecular Function	91%
Blast2go	lytic vacuole	GO:0000323	Cellular Component	91%
Blast2go	basal plasma membrane	GO:0009925	Cellular Component	91%
Blast2go	integral to membrane	GO:0016021	Cellular Component	91%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
73	66		33		0.997452
74		66	33		0.997452
90		33		66	0.997452
92	66	33			0.997452
162		16		83	0.994512
173		16		83	0.994512
208		66	33		1.0
252			87	12	0.992554
253		87	12		0.992554
254			12	87	0.992554
255			12	87	0.992554
266	85		14		0.993533
313	85		14		0.993533
325			57	42	1.0
336			11	88	0.923564
340	62		12	25	1.0
341			87	12	0.992554
343	12	87			0.992554
351			12	87	0.992554
352	87	12			0.992554
356			87	12	0.992554
364	12	87			0.992554
509		66		33	1.0
654		10	90		0.90298
689	71	28			1.0
690			28	71	1.0
693	71		28		1.0
695			30	69	1.0
697		30		69	1.0
699	69			30	1.0
702	66		33		1.0
707	66	33			1.0
852	36		63		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain