SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13762

Length: 985 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13762

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pattern formation protein, putative n=1 Tax=Ricinus communis RepID=B9S916_RICCO	-	-	77%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	pattern formation	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	81%
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	81%
Blast2go	regulation of vesicle targeting, to, from or within Golgi	GO:0048209	Biological Process	81%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	81%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	81%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	81%
Blast2go	regulation of ARF protein signal transduction	GO:0032012	Biological Process	81%
Blast2go	cell adhesion	GO:0007155	Biological Process	81%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	81%
Blast2go	establishment of planar polarity	GO:0001736	Biological Process	81%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	81%
Blast2go	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	81%
Blast2go	GTP:GDP antiporter activity	GO:0010292	Molecular Function	81%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	81%
Blast2go	intracellular	GO:0005622	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Overlapping hits, possible frame ERROR between 687 and 686, Distance to subject end: 317 aas, your sequence is shorter than subject: 329 - 1451

Fln protein: MGEDEDVSQECVDGFLAVAKVSACHRLEDVLDDLVASLCKFTTLLNPSASIEEHVLAFGDDTKARMVTVAVFTIANRFGDYIRNGWRSTLDCIIRLHKLGLLPARIASDAADDPELVNDSIHGKVSSGGLSLSHMPSIGTRRRTSGLMGRFSQLLYLDSDEPRTQPTEQQLAAQQRTVQTIQQCRIDSIFTESKFLQAESLLQLTRALIWVASRLQKGNSTEDEDTAVxxCLELLIAIALNNRDRIMILWQGIHDYIAGIVQSTGMPCALVEKAVFGLLRICQRLLPYKENLSEELLRSLQLILKLDARVADVYCERITQEIMQLVKTN

Protein Length: 330

Fln nts: ATGGGAGAGGATGAAGATGTTTCCCAAGAATGTGTGGATGGTTTTCTTGCTGTGGCAAAAGTGTCAGCTTGCCATCGTTTGGAGGATGTGTTGGATGACTTGGTGGCTTCTCTGTGTAAATTCACAACACTTTTGAACCCATCTGCATCTATTGAAGAACATGTTCTTGCCTTTGGCGATGATACAAAAGCAAGGATGGTGACTGTTGCAGTTTTCACAATAGCCAATAGGTTTGGGGACTATATTCGGAATGGATGGAGGAGTACCCTTGATTGTATTATCAGATTACACAAGTTAGGTCTATTGCCTGCCCGAATTGCAAGTGATGCAGCTGATGATCCAGAACTTGTAAATGATTCTATACATGGGAAAGTTTCCTCTGGGGGTCTATCTCTGTCTCATATGCCCTCAATAGGCACACGACGGCGAACATCAGGGTTAATGGGTAGATTTAGTCAGCTTTTGTATCTTGACAGTGATGAACCGAGGACCCAGCCAACTGAACAGCAACTTGCTGCACAACAGCGCACTGTGCAAACAATCCAACAGTGCCGTATTGATAGCATATTCACTGAGAGTAAGTTTTTGCAAGCTGAATCGTTGCTGCAATTAACAAGGGCCCTCATCTGGGTAGCAAGTAGACTGCAGAAGGGCAATTCAACCGAAGATGAGGATACTGCTGTGxxxxxxTGTCTTGAGTTATTGATTGCTATTGCACTGAATAATCGGGACAGGATTATGATTCTATGGCAGGGCATTCATGATTATATTGCAGGTATTGTACAGTCAACAGGTATGCCTTGTGCTCTCGTAGAAAAGGCTGTCTTTGGACTCTTACGTATCTGTCAACGATTGCTTCCATACAAGGAAAACCTTTCAGAGGAGCTTTTAAGATCTTTACAACTTATTTTAAAACTGGATGCTAGGGTGGCTGACGTGTATTGTGAGCGCATTACTCAAGAAATCATGCAACTTGTGAAAACAAAT

Fln Alignment:

sp_v1.1_unigene13762___EDEDVSQECVDGFLAVAKVSACHRLEDVLDDLVASLCKFTTLLNPSASIEEHVLAFGDDTKARMVTVAVFTIANRFGDYIRNGWRSTLDCIIRLHKLGLLPARIASDAADDPELVNDSIHGKVSSGGLSLSHMPSIGTRRRTSGLMGRFSQLLYLDSDEPRTQPTEQQLAAQQRTVQTIQQCRIDSIFTESKFLQAESLLQLTRALIWVASRLQKGNST-EDEDTAVxCLELLIAIALNNRDRIMILWQGIHDYIAGIVQSTGMPCALVEKAVFGLLRICQRLLPYKENLSEELLRSLQLILKLDARVADVYCERITQEIMQLVKTN
Q42510_______________EHEDVYQTCIDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPS-SVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESEHSSEQGQGKPLANSLSSAHLQSMGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGTSSPEDEDTAVxCLELLIAITLNNRDRIVLLWQGVYEHIATIAQSTVMPCNLVDKAIFGLLRICQRLLPYKESLADELLRSLQLVLKLDARVADAYCEQIAIEVSRLVKAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain