SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13743

Length: 577 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13743
CGAATGTGTGGGGAACCTTGCTCGCTGCATGTAGAGTGCATCGCAATTTAGAATTAGGAGATTGTGTGGCACAACGATTTCTTGAGTTAGAACCTGACAATCCTGGATTTTATGTCTTGCTATCAAATATGTATGCTGAGGCTGGCAGGTGGGATGATGCAGAGAAGATGAGATTACTTATGAAGCAAAGGGGATTGAAAAAGAGCCCAGGATGTAGCTGGATTGAGGTTAGCAACAGAGTTCATACATTTCATGTGGGAGACAAATCACACCCACAATCAAATGAAATATATGCATTGTTAGGTACACTGGCTAAGCAGATGAAAGCAGCTGGTTATGTACCGGACACTAGCTTTGTGTTGCTTGATGTGGACGAGGAAGAGAAGGAACACATCTTATGTGGTCACAGCGAGAAGTTGGCTATTGCTTTTGGGATTATAAACACATCACCTGGTACTTCAATTAGGATAAACAAGAACCTTCGTGTTTGTGGTGATTGCCATTCTGCAACTAAGTTCATCTCCAAGATTGTTAACCGTGAAATTATTGTTAGAGACTCTTACCGTTTCCATCATTT

Ace file of the UniGene sp_v1.1_unigene13743

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	pentatricopeptide repeat protein 65	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 191 - 370

Fln protein: NVWGTLLAACRVHRNLELGDCVAQRFLELEPDNPGFYVLLSNMYAEAGRWDDAEKMRLLMKQRGLKKSPGCSWIEVSNRVHTFHVGDKSHPQSNEIYALLGTLAKQMKAAGYVPDTSFVLLDVDEEEKEHILCGHSEKLAIAFGIINTSPGTSIRINKNLRVCGDCHSATKFISKIVNREIIVRDSYRFHH

Protein Length: 192

Fln nts: CGAATGTGTGGGGAACCTTGCTCGCTGCATGTAGAGTGCATCGCAATTTAGAATTAGGAGATTGTGTGGCACAACGATTTCTTGAGTTAGAACCTGACAATCCTGGATTTTATGTCTTGCTATCAAATATGTATGCTGAGGCTGGCAGGTGGGATGATGCAGAGAAGATGAGATTACTTATGAAGCAAAGGGGATTGAAAAAGAGCCCAGGATGTAGCTGGATTGAGGTTAGCAACAGAGTTCATACATTTCATGTGGGAGACAAATCACACCCACAATCAAATGAAATATATGCATTGTTAGGTACACTGGCTAAGCAGATGAAAGCAGCTGGTTATGTACCGGACACTAGCTTTGTGTTGCTTGATGTGGACGAGGAAGAGAAGGAACACATCTTATGTGGTCACAGCGAGAAGTTGGCTATTGCTTTTGGGATTATAAACACATCACCTGGTACTTCAATTAGGATAAACAAGAACCTTCGTGTTTGTGGTGATTGCCATTCTGCAACTAAGTTCATCTCCAAGATTGTTAACCGTGAAATTATTGTTAGAGACTCTTACCGTTTCCATCATTT

Fln Alignment:

sp_v1.1_unigene13743___NVWGTLLAACRVHRNLELGDCVAQRFLELEPDNPGFYVLLSNMYAEAGRWDDAEKMRLLMKQRGLKKSPGCSWIEVSNRVHTFHVGDKSHPQSNEIYALLGTLAKQMKAAGYVPDTSFVLLDVDEEEKEHILCGHSEKLAIAFGIINTSPGTSIRINKNLRVCGDCHSATKFISKIVNREIIVRDSYRFHH
A9P0W0_______________SVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain