SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13683

Length: 1107 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13683 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	comt, MGC154444, mb-comt; catechol-O-methyltransferase (EC:2.1.1.6)	-	-	9.0e-14	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	catechol-o-methyltransferase	-	-	3.10584e-24	51%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	3.10584e-24	51%

Source	KEGGs	Term	e value	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	3.10584e-24	51%
Blast2go	Tetracycline biosynthesis	00253	3.10584e-24	51%
Blast2go	Histidine metabolism	00340	3.10584e-24	51%
Blast2go	Tyrosine metabolism	00350	3.10584e-24	51%
Blast2go	Phenylalanine metabolism	00360	3.10584e-24	51%
Blast2go	Tryptophan metabolism	00380	3.10584e-24	51%
Blast2go	Benzoxazinoid biosynthesis	00402	3.10584e-24	51%
Blast2go	Selenocompound metabolism	00450	3.10584e-24	51%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	3.10584e-24	51%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	3.10584e-24	51%
Blast2go	Methane metabolism	00680	3.10584e-24	51%
Blast2go	Porphyrin and chlorophyll metabolism	00860	3.10584e-24	51%
Blast2go	Carotenoid biosynthesis	00906	3.10584e-24	51%
Blast2go	Phenylpropanoid biosynthesis	00940	3.10584e-24	51%
Blast2go	Flavonoid biosynthesis	00941	3.10584e-24	51%
Blast2go	Anthocyanin biosynthesis	00942	3.10584e-24	51%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	3.10584e-24	51%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	3.10584e-24	51%
Blast2go	Insect hormone biosynthesis	00981	3.10584e-24	51%
Blast2go	Biosynthesis of type II polyketide products	01057	3.10584e-24	51%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.10584e-24	51%
Blast2go	Metabolic pathways	01100	3.10584e-24	51%
Blast2go	Biosynthesis of secondary metabolites	01110	3.10584e-24	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	3.10584e-24	51%
Blast2go	primary metabolic process	GO:0044238	Biological Process	3.10584e-24	51%
Blast2go	biological regulation	GO:0065007	Biological Process	3.10584e-24	51%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	3.10584e-24	51%
Blast2go	binding	GO:0005488	Molecular Function	3.10584e-24	51%
Blast2go	cytoplasm	GO:0005737	Cellular Component	3.10584e-24	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-methyltransferase, family 3	IPR002935	-	3.10584e-24	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P099

Fln msg:

Fln protein: MAQVVKEAGHKAMVQVKQAGLKAVKLLLGGSSESDEEALLRKVLEELEKKIPRNRDSVLGVIDTCAEGITLRRHLGKELRSVLSTEVKKKDPIMALELGTLCGYSAIIIASAMKIPPGKLCCLDTNMQTTGHVKKILNYAGISAEVRVLDETSKTSEICSDVTLIKGSLIDVRTKLKELRDIMKAQYFNFIFMNHSINDYGPDFGLLIEEGLVGKGTVIVANTKEFPASQDKLKYLDEHIPKGSNITLQTTVPTNGMTVSTIL*

Protein Length: 265

Fln nts: GTACATGGGGGTGGCCGTAGATTGAAAGCCAATATCTTCTTGCTCCACCAATTAAAGCC_-_ATGGCACAAGTTGTGAAAGAGGCAGGGCACAAAGCCATGGTACAAGTGAAACAGGCAGGGCTCAAAGCTGTGAAATTGCTGCTGGGCGGTTCAAGTGAGAGCGACGAAGAAGCCTTGCTCAGGAAAGTCCTGGAAGAGTTAGAGAAAAAAATTCCACGAAATCGAGACTCTGTGCTAGGAGTCATTGACACCTGTGCTGAGGGTATTACGTTACGAAGACATTTAGGGAAGGAGCTTCGCTCTGTTCTGTCTACGGAAGTGAAGAAAAAGGATCCCATTATGGCCCTAGAGCTTGGAACTCTTTGCGGGTATTCGGCCATTATAATTGCTTCCGCCATGAAAATTCCTCCCGGCAAGCTATGTTGTTTAGACACAAACATGCAGACCACTGGGCATGTCAAGAAAATCTTAAATTACGCAGGCATATCTGCAGAGGTGCGAGTGTTGGATGAAACATCAAAAACATCAGAAATATGTTCAGATGTCACACTCATTAAAGGAAGCTTGATTGACGTGCGTACAAAATTAAAGGAGTTGCGCGATATAATGAAAGCCCAGTACTTTAATTTCATATTCATGAACCACTCTATTAATGATTATGGCCCAGATTTTGGTCTGCTCATCGAAGAAGGATTGGTTGGAAAAGGCACTGTCATCGTTGCGAACACCAAAGAATTTCCCGCGTCTCAGGATAAGTTGAAATATTTGGATGAACATATACCTAAAGGATCGAACATCACATTGCAGACCACAGTGCCCACCAATGGAATGACAGTGTCTACTATCCTTTAA___TTGGATCAACAGGTTTTATATTGTAATAGTGTCTACTATGCTTTCATAAGTTTTATGTTTTAATATGGTTTTAGCCTAAGTTCCCAAATCGCTTTGGGACGTATTATGTGAACATGCCGTTTACTTTAAATAAATAAATAAGGCCTATTAATATGCGAGAGTTCTATTTTATCCTGTTTTTCTTAGGAAGACAGAATTATATAAAAAGGATGAAAAATTATCTTCTCCATATTAATAAGTGAATATTAATCTCGCC

Fln Alignment:

sp_v1.1_unigene13683___NRDSVLGVIDTCAEGITLRRHLGKELRSVLSTEVKKKDPIMALELGTLCGYSAIIIASAMKIPPGKLCCLDTNMQTTGHVKKILNYAGISAEVRVLDETSKTSEICSDVTLIKGSLIDVRTKLKELRDIMKAQYFNFIFMNHSINDYGPDFGLLIEEGLVGKGTVIVANTKEFPASQDKLKYLDEHIPKGSNITLQTTVPTN------GMTVSTIL
A9P099_______________NAESVVSAIESFTDRSWMPI-LGREKGCLLDAAVQKFDPKVALEIGTYCGYSAIRIASKMTKPDSKLICIEMNPHNYAVATAMIEHAGLS----------------SKVIMLRGTLSDLDDSLEEFMIEMTAPYFDFIFMDQFKDCYLPDFLLLQDKGMLGKGTGIVAETIGFAEAQNYHNYL-----KGHRKELETEIYTSESLLPCKMTVSTYI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
663	10		90		0.999898
780		4		85	0.999726
896	83			10	1.0
898	21			60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
116	130	TTAT TTAT TTAT TTA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain