SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13667

Length: 2160 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13667
CGTCGTGACCTTGGCTGTCACTCAAGTTCTTCATGTGCTTGATTTGTTGCTTCTCTTTTTCTTTTCACCAGAAAATGGAGGTTTTGCCCCTGTTCTCTTCTGGACTGGTTGCATATACTTGAGAAAACTTTTGGTTTGACACTGCATCAAATGATCGTGCAGCAAAGTTCATGTTCCTGGACTGAAACAAATAAGTCGCAAACAGCACCCCTTCAACTCTTTCAAAGTTGTGACACTGAAGAATTCTTCAGGAGCTGATTGAGATTGCAGTTGGGCTTAAATAGATGTGCATTTTCTATTCATTTCATCCATGGCAATTTTGCCACATGGAGCTGACCAAGATTATACTTGGATTTTGTGCTTTCTGACCCAGGCTGCTATGCAGTTTTGTGACCAGATTGGAGCTGTTCGAAGAGATGTGACCGGTGTTCTTGAATGGGTGTTGACTAAAATGATTGTATTTATATGTAGCTGTAACACTGACTTGCCCTTCAAACTTTTCTATGCAGGTACTTAACAGTAAATTATGGGTACAACGATGGAGTATTTTCATGATCCTATGACCACCCATGGATCTAATGGGCTGGAGGAACATACCTCAACTTCCACAAAAAGTGGCGTGGAAGGAAACGCTGAACGCTTGGAAAAGCTAGACAAAGGATATTTACAGTATGGTTGCTCACATTATAAACGGAGATGCCGTATTAGAGCGCCATGTTGCAATGAGGTCTTTGATTGTAGACATTGTCACAATGAAGCAAAGAATTCTGTCAATGTTAAGCCCCAACAGAGACATGATGTTCCTCGACACAATCTCCAAAGGGTCATTTGTTCACTTTGTGACACTGAGCAAGATGTTCATCAAGTGTGTATTAACTGTGGCGTCTGCATGGGGAAGTACTTTTGTGAAACATGCAAGCTATTTGATGATGATATCTCAAAACAGCAATACCACTGTGATGGATGTGGTATATGTAGAACTGGGGGCAGGGATAATTTCTTCCACTGCTTTAAATGTGGTTGTTGCTATTCGATTATGTTGAAGGATTGTCATCCTTGTGTAGAAGGAGCAATGCACCACAACTGTCCCGTTTGTTTTGAGTTCCTGTTCGAGTCGACGAGGGATATTAATGTACTACCTTGTGGGCACACTATTCATATGGACTGTTTGAAAGAGATGCAACAGCACCTACAGTTCTTTTGTCCAGTGTGTTCGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAACTTGACGAAGAGGTTGCTTTGACACCAATGCCCGAGTCCTACCAGAACAAGAAGATCTGGATTTTATGCAATGATTGTAATGCAACTTCAGAAGTACCGTTTCACATTGTCGCACAAAAGTGCCTGAACTGCAATTCGTATAACACCCGACAGACCAGAGGATGTCACACCACAGACACTTGTCGACAATAACTGTTGCCGTTGTGATGTCTAACTGAAGGTTCTGATGAGCAATCGTAAAAGCTGCTGCGGCCATGAAGACGATCTTGCAATGAAGATTCATTATACCTCACAAGCATCAAATATCCTCTGGATTGTATGAAAGTGGCTGTACTATCATGTTATAATTTTACTGCAGTGAATAAATACCTGTCCTGCCTGAGTGGCTCTGAAAGTTATGCATTGCAGTTTGTTGCCATTTGCTCGACCTGCTAGGATAGCTTTCAATGGATTTGGCAGGGGCAGATCAGAAAGCACACAAGCAAAGGCCGGATAGAGCAGCGGCTAGCTTGGTGCATGTCAAAATTGAAGAAAAAATCATTTTAGCGCCTTTTGGAATAGACTGGGGTGTACGGGGACCAGTAGTTATGCCATTTCTATTATCTCGAGTTTCTTGTCTAAACTTCAGAGAATTTGCCAAAAAAATTCTGGATTTTTGAAACAATATAGAAATGGCTTTCCAGTTCTTGGAAAATTTAAAACTCGTCAATGAAGCTGATATATTTTGTGATAACCAGTCTTCCTTTAATTTAGTTAATTTGTGCCTCAGCTCTGATCCTAGTTTTTATTCCTCTCGCTGTACATGTAATTGTAATCTTGGGATTCTGGAAGTGTTGTTTCATGGTATTTCAAATAAAAACACGAACAGACTGAATAATTGAAAACGAAGAAAGTCTTTTTAGCTTGTA

Ace file of the UniGene sp_v1.1_unigene13667

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger protein, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	ring finger and chy zinc finger domain-containing protein 1	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	83%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	83%
Blast2go	Rubredoxin-type fold	IPR004039	-	83%
Blast2go	Zinc finger, CHY-type	IPR008913	-	83%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	83%
Blast2go	Zinc finger, CTCHY-type	IPR017921	-	83%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg: your sequence is longer than subject: 306 - 273

Fln protein: MGTTMEYFHDPMTTHGSNGLEEHTSTSTKSGVEGNAERLEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPRHNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRDNFFHCFKCGCCYSIMLKDCHPCVEGAMHHNCPVCFEFLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQTRGCHTTDTCRQ*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCTTCATGTGCTTGATTTGTTGCTTCTCTTTTTCTTTTCACCAGAAAATGGAGGTTTTGCCCCTGTTCTCTTCTGGACTGGTTGCATATACTTGAGAAAACTTTTGGTTTGACACTGCATCAAATGATCGTGCAGCAAAGTTCATGTTCCTGGACTGAAACAAATAAGTCGCAAACAGCACCCCTTCAACTCTTTCAAAGTTGTGACACTGAAGAATTCTTCAGGAGCTGATTGAGATTGCAGTTGGGCTTAAATAGATGTGCATTTTCTATTCATTTCATCCATGGCAATTTTGCCACATGGAGCTGACCAAGATTATACTTGGATTTTGTGCTTTCTGACCCAGGCTGCTATGCAGTTTTGTGACCAGATTGGAGCTGTTCGAAGAGATGTGACCGGTGTTCTTGAATGGGTGTTGACTAAAATGATTGTATTTATATGTAGCTGTAACACTGACTTGCCCTTCAAACTTTTCTATGCAGGTACTTAACAGTAAATT_-_ATGGGTACAACGATGGAGTATTTTCATGATCCTATGACCACCCATGGATCTAATGGGCTGGAGGAACATACCTCAACTTCCACAAAAAGTGGCGTGGAAGGAAACGCTGAACGCTTGGAAAAGCTAGACAAAGGATATTTACAGTATGGTTGCTCACATTATAAACGGAGATGCCGTATTAGAGCGCCATGTTGCAATGAGGTCTTTGATTGTAGACATTGTCACAATGAAGCAAAGAATTCTGTCAATGTTAAGCCCCAACAGAGACATGATGTTCCTCGACACAATCTCCAAAGGGTCATTTGTTCACTTTGTGACACTGAGCAAGATGTTCATCAAGTGTGTATTAACTGTGGCGTCTGCATGGGGAAGTACTTTTGTGAAACATGCAAGCTATTTGATGATGATATCTCAAAACAGCAATACCACTGTGATGGATGTGGTATATGTAGAACTGGGGGCAGGGATAATTTCTTCCACTGCTTTAAATGTGGTTGTTGCTATTCGATTATGTTGAAGGATTGTCATCCTTGTGTAGAAGGAGCAATGCACCACAACTGTCCCGTTTGTTTTGAGTTCCTGTTCGAGTCGACGAGGGATATTAATGTACTACCTTGTGGGCACACTATTCATATGGACTGTTTGAAAGAGATGCAACAGCACCTACAGTTCTTTTGTCCAGTGTGTTCGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAACTTGACGAAGAGGTTGCTTTGACACCAATGCCCGAGTCCTACCAGAACAAGAAGATCTGGATTTTATGCAATGATTGTAATGCAACTTCAGAAGTACCGTTTCACATTGTCGCACAAAAGTGCCTGAACTGCAATTCGTATAACACCCGACAGACCAGAGGATGTCACACCACAGACACTTGTCGACAATAA___CTGTTGCCGTTGTGATGTCTAACTGAAGGTTCTGATGAGCAATCGTAAAAGCTGCTGCGGCCATGAAGACGATCTTGCAATGAAGATTCATTATACCTCACAAGCATCAAATATCCTCTGGATTGTATGAAAGTGGCTGTACTATCATGTTATAATTTTACTGCAGTGAATAAATACCTGTCCTGCCTGAGTGGCTCTGAAAGTTATGCATTGCAGTTTGTTGCCATTTGCTCGACCTGCTAGGATAGCTTTCAATGGATTTGGCAGGGGCAGATCAGAAAGCACACAAGCAAAGGCCGGATAGAGCAGCGGCTAGCTTGGTGCATGTCAAAATTGAAGAAAAAATCATTTTAGCGCCTTTTGGAATAGACTGGGGTGTACGGGGACCAGTAGTTATGCCATTTCTATTATCTCGAGTTTCTTGTCTAAACTTCAGAGAATTTGCCAAAAAAATTCTGGATTTTTGAAACAATATAGAAATGGCTTTCCAGTTCTTGGAAAATTTAAAACTCGTCAATGAAGCTGATATATTTTGTGATAACCAGTCTTCCTTTAATTTAGTTAATTTGTGCCTCAGCTCTGATCCTAGTTTTTATTCCTCTCGCTGTACATGTAATTGTAATCTTGGGATTCTGGAAGTGTTGTTTCATGGTATTTCAAATAAAAACACGAACAGACTGAATAATTGAAAACGAAGAAAGTCTTTTTAGCTTGTA

Fln Alignment:

sp_v1.1_unigene13667___LEKLDKGYLQYGCSHYKRRCRIRAPCCNEVFDCRHCHNEAKNSVNVKPQQRHDVPRHNLQRVICSLCDTEQDVHQVCINCGVCMGKYFCETCKLFDDDISKQQYHCDGCGICRTGGRDNFFHCFKCGCCYSIMLKDCHPCVEGAMHHNCPVCFEFLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQTRG
D5A9X0_______________LDRLNTGKMEHGCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK-DPKQRHELPRYKVERVICSLCDTEQNVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTRQTRG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2125	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain