SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13664

Length: 565 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13664
AAGGTTTCGAGATATATAGTGTTGCTATATAATTGTTTGAGAATGGGATTCATGAGAAGCGTTAGAATAGCGTTCCCACAATTCATGTCAAGGTTCTGGTCATTCTTTGCACTTCTGTGTAGCCCAAGGGCAAGGCTGCCAGGCCAATCCCCGGATGGCAGAGAGGCAGTCCTGCTAAACTATGTTCTAAAAAATTCAGAGAAGGGAAATGCAGAGTCTGTGCTGAGTGCCATTGAGAGTCATGCTCAGCAATCTTGGCTGACGAATTTAGGCAAGGAGAAGAGCTCTGTGCTAGATGGTGCAGTGCAGAAATTTGATCCCAAAGTGGTCTTAGAGCTTGGAACTTACTGTGGCTATTCTGCCATAAGAATTGCCTCCAAGATGACAAAGCCAGACAGCAAGCTGGTCTCTATAGAAAAGAATCCACAGAATTGTAGTGTTGCCAGAGCAATTATTGAACATGCAGGTCTGTCATCAAAGGCGAAGGTGATGGAAGGAACACTGGGTAGCAATTTGGAGGAACTGGATGAAATTTTAGAAGACGAGAGAGTTCCATACTTTGAAT

Ace file of the UniGene sp_v1.1_unigene13664

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cathechol O-methyltransferase (Fragment) n=5 Tax=Pinus RepID=B0ZR48_PINTA	-	-	6.0e-26	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	cathechol o-methyltransferase	-	-	2.66247e-44	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	O-methyltransferase activity	GO:0008171	Molecular Function	2.66247e-44	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-methyltransferase, family 3	IPR002935	-	2.66247e-44	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P099

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 174 - 248

Fln protein: MGFMRSVRIAFPQFMSRFWSFFALLCSPRARLPGQSPDGREAVLLNYVLKNSEKGNAESVLSAIESHAQQSWLTNLGKEKSSVLDGAVQKFDPKVVLELGTYCGYSAIRIASKMTKPDSKLVSIEKNPQNCSVARAIIEHAGLSSKAKVMEGTLGSNLEELDEILEDERVPYFE

Protein Length: 175

Fln nts: AAGGTTTCGAGATATATAGTGTTGCTATATAATTGTTTGAGA_-_ATGGGATTCATGAGAAGCGTTAGAATAGCGTTCCCACAATTCATGTCAAGGTTCTGGTCATTCTTTGCACTTCTGTGTAGCCCAAGGGCAAGGCTGCCAGGCCAATCCCCGGATGGCAGAGAGGCAGTCCTGCTAAACTATGTTCTAAAAAATTCAGAGAAGGGAAATGCAGAGTCTGTGCTGAGTGCCATTGAGAGTCATGCTCAGCAATCTTGGCTGACGAATTTAGGCAAGGAGAAGAGCTCTGTGCTAGATGGTGCAGTGCAGAAATTTGATCCCAAAGTGGTCTTAGAGCTTGGAACTTACTGTGGCTATTCTGCCATAAGAATTGCCTCCAAGATGACAAAGCCAGACAGCAAGCTGGTCTCTATAGAAAAGAATCCACAGAATTGTAGTGTTGCCAGAGCAATTATTGAACATGCAGGTCTGTCATCAAAGGCGAAGGTGATGGAAGGAACACTGGGTAGCAATTTGGAGGAACTGGATGAAATTTTAGAAGACGAGAGAGTTCCATACTTTGAAT

Fln Alignment:

sp_v1.1_unigene13664___QFMSRFWSFFALLCSPRARLPGQSPDGREAVLLNYVLKNSEKGNAESVLSAIESHAQQSWLTNLGKEKSSVLDGAVQKFDPKVVLELGTYCGYSAIRIASKMTKPDSKLVSIEKNPQNCSVARAIIEHAGLSSKAKVMEGTLGSNXXXXXXXXXXXRVPYFE
A9P099_______________EFVSKVASYVTFSFDGRARLTGHSSDGRERAVLNYVQQNVQRGNAESVVSAIESFTDRSWMPILGREKGCLLDAAVQKFDPKVALEIGTYCGYSAIRIASKMTKPDSKLICIEMNPHNYAVATAMIEHAGLSSKVIMLRGTLSDLDDSLEEFMIEMTAPYFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain