SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13656

Length: 1202 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13656

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methyltransf_16 domain containing protein	-	-	1.0e-37	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nicotinamide N-methyltransferase, putative	IPR019410	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKZ1

Fln msg:

Fln protein: MEDGDEYEILKVGCLQIPGRLISDASEEIMLLWAIGQPCTAPQNRFVKHTSNHLKLDACGHNLCILQSPSSMNQTGVTGGVMWDSGVVLGKFLEHAVDCNVLNLQGKKCVELGSGCGLVGCVAALLGAQVILTDLPDRLRLLEKNVEENVRKVGGRGTAQVRELTWGEDLDSDLLDPLPDYVLGSDVIYNEDVVPDLITTIESLCGSHTIIFISGELRNDVVLEYFLECALKSFIVGYIEQRIWHPEYRSRRVAIFMMTKKL*

Protein Length: 264

Fln nts: ATGGGGCTCTCAGATCTTTATATTTGTCTGACGTTGGGTGTCCTCCAGATTTTTCATAAGTGGAAGCCGCAGGGTGTTTGGTCCTACCTGTGCGTGGCAGGTG_-_ATGGAAGATGGTGACGAGTACGAAATTCTTAAGGTGGGATGTCTCCAAATTCCTGGCAGACTTATTTCCGATGCCTCTGAGGAAATTATGTTGCTCTGGGCAATTGGCCAACCGTGTACAGCCCCCCAAAACAGATTTGTCAAACACACTTCCAACCATCTCAAGCTTGATGCCTGCGGTCACAACCTCTGCATTCTCCAATCCCCATCCTCCATGAACCAAACAGGCGTAACAGGGGGCGTTATGTGGGACAGTGGGGTTGTGCTGGGAAAGTTCCTAGAGCACGCTGTTGACTGTAATGTGTTGAATCTTCAAGGCAAAAAGTGTGTAGAACTTGGCTCGGGCTGTGGACTGGTTGGTTGTGTTGCAGCCCTTCTCGGTGCCCAAGTCATTTTGACAGACTTGCCCGACCGCTTGAGATTGCTTGAGAAGAACGTGGAGGAGAATGTGAGGAAAGTGGGTGGACGCGGTACAGCACAAGTGAGGGAATTGACATGGGGAGAGGACTTGGATTCTGATCTGTTGGACCCTCTTCCCGATTATGTCCTTGGTTCAGATGTTATCTATAACGAGGACGTTGTTCCTGATTTGATTACTACTATAGAGAGTCTTTGTGGAAGCCATACCATCATTTTTATTTCCGGCGAGCTTCGCAATGATGTTGTGCTTGAGTACTTTTTGGAATGTGCATTGAAAAGCTTCATTGTTGGGTACATTGAGCAAAGGATTTGGCACCCAGAGTACAGAAGTCGGCGTGTTGCAATCTTTATGATGACTAAGAAGTTATAA___AATATGGTTTTAGAGGGCTCAATACGGAATTTTCAAAAATCAGTTGTCGACTTCGGCAGGCATAGGAGCATCAGAACACATATTAAGAGAGGTTGTTTAATGATGATTTCTAAAAAGCCCATCACACTTGGGCAGCTCAAGGGGTTTTTTATGGGATATGGTTGATACAGTGAGAATGTTATCTTGTGAATAATAAAATTATGTATTTCGATAGTTTCTGATATCAAAGTGTGATTAGAATCCTTCTGTTATGCATTCTTTATTTAACCTTACACACATACTAGAATCCATGTCAAAGAATACAATGATG

Fln Alignment:

sp_v1.1_unigene13656___MEDGDEYEILKVGCLQIPGRLISDASEEIMLLWAIGQPCTAPQNRFVKHTSNHLKLDACGHNLCILQSPSSMNQTGVTGGVMWDSGVVLGKFLEHAVDCNVLNLQGKKCVELGSGCGLVGCVAALLGAQVILTDLPDRLRLLEKNVEENVRKVGGRGTAQVRELTWGEXXXXXXXXXXXXYVLGSDVIYNEDVVPDLITTIESLCGSHTIIFISGELRNDVVLEYFLECALKSFIVGYIEQRIWHPEYRSRRVAIFMMTKKL
A9NKZ1_______________MEDDDEYEIVKVGGLQIPGRLISDASEEIMLLWAIGQPCTAPQNRFVKHTSNHLKLDACGHNLCILQSPSSMNQTGVTGGVMWDSGVVLGKFLEHAVDSNVLNLQGKKCVELGSGCGLVGCIAALLGAQVILTDLSDRLRLLEKNVEENVKKVGGRGTAQVRELTWGEDLDSDLLDPLPDYVLGSDVVYNEDVVHDLITTIQSLCGSHTIIFISGELRNDVVLEYFLECALKSFIVGYIEQRIWHPEYRSRRVAIFMMTKKL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
661	62	37			1.0
663	62			37	1.0
664		37		62	1.0
667			37	62	1.0
669		37		62	1.0
674	62		37		1.0
675	62		37		1.0
677			12	37	1.0
680	75	25			1.0
681	25	12	62		1.0
682		25	62	12	1.0
683	62	12		25	1.0
684	12	87			0.992554
685	25		75		1.0
721		11		88	0.923564
724		11	88		0.923564
726	88			11	0.923564
727	88		11		0.923564
728	11		88		0.923564
731	88			11	0.923564
733	88		11		0.923564
735		88		11	0.923564
736	88		11		0.923564
742		11		88	0.923564
744		11		88	0.923564
797		85		14	0.993533
803	66		33		1.0
985	75		25		1.0
1008		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain