SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13655

Length: 373 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene13655
CGTCGTGACCTTGGCTGTCACTCAAATGCCAACTGAGGTGTTGTTATCTGATATTTATGCTGTGGAGCTTGCTAGTAGGGGTTCAATTTTTGAGTCAAAATCTGGTGCAGCAACATACAGCTTATTGAGTTGTGTTTCAAAGTTGCATTGTTTTGCTGTACACTTAGTTGAAAAGTCACATAAACGACATTCTGTTTGGGTTCCAAGGGCACTTGTGTTTGGCCATCCAGATCCCAAGACTTGTCAAGAATGGGTCGAACGCATCCATAACTTTCTAAACATAGACGATAAAAGGCCTAAGAAACTCTTGGTTTTTGTAAACCCTCTAAGTGGAAAAAAGCATGCTGTTAAAACTTGGGAAGTAGTTCGTCCT

Ace file of the UniGene sp_v1.1_unigene13655 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ceramide kinase, putative n=1 Tax=Ricinus communis RepID=B9R9W9_RICCO	-	-	1.0e-19	45%
FL-Next	tr=Ceramide kinase, putative; Ricinus communis (Castor bean).	-	-	0.0	45%
Blast2go	ceramide kinase	-	-	2.111e-19	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	2.111e-19	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Diacylglycerol kinase, catalytic domain	IPR001206	-	2.111e-19	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9R9W9

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 124 - 423

Fln protein: VVTLAVTQMPTEVLLSDIYAVELASRGSIFESKSGAATYSLLSCVSKLHCFAVHLVEKSHKRHSVWVPRALVFGHPDPKTCQEWVERIHNFLNIDDKRPKKLLVFVNPLSGKKHAVKTWEVVRP

Protein Length: 125

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGCCAACTGAGGTGTTGTTATCTGATATTTATGCTGTGGAGCTTGCTAGTAGGGGTTCAATTTTTGAGTCAAAATCTGGTGCAGCAACATACAGCTTATTGAGTTGTGTTTCAAAGTTGCATTGTTTTGCTGTACACTTAGTTGAAAAGTCACATAAACGACATTCTGTTTGGGTTCCAAGGGCACTTGTGTTTGGCCATCCAGATCCCAAGACTTGTCAAGAATGGGTCGAACGCATCCATAACTTTCTAAACATAGACGATAAAAGGCCTAAGAAACTCTTGGTTTTTGTAAACCCTCTAAGTGGAAAAAAGCATGCTGTTAAAACTTGGGAAGTAGTTCGTCCT

Fln Alignment:

sp_v1.1_unigene13655___VTQMPTEVLLSDIYAVELASRGSIFESKS---GAATYSLLSCVSKLHCFAVHLVEKSHKRHSVWVPRALVFGHPDPKTCQEWVERIHNFLNIDDKRPKKLLVFVNPLSGKKHAVKTWEVVRP
B9R9W9_______________VPKVATEIKFSGTYGVEITNYGLIHGSNRPNVGKYLLSRKSHDSEMHRFTVHGVQKSQTQPCLWVLTAYTFGHKDLQTCHIWVNRIKASLKIEVERPKNLLVFVNPRSGKAHGCRTWETVAP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
117		80	20		0.995493
155	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain