SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13652

Length: 2484 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13652
ATGGGGACTAAGATGAAGGGGGACTTTGTTCACCGATAAAATACACTTTTATTTATGCATTGCAATAAAAGCTTCGTGGGCTTGGATGGGGATCGGAAAAAGCATTAGAACAAAGCCTCCCCCGCCCTCTGTGGTTATTAAGGTATCCTTATATAGGAGAAAGAGATCTGACCCATCTGCTATAAGGCCTTTCCCTGATCTATTTCTCCATATTTGGGTTCCAAGGAAATCTGTGCACTGGGGGCTCTGTGACACACAGAGGGCATCGGTCAAAGGAGCCTCTCTACTGGTTTCACTTACCCAAGGCAAACATTTGCTTGGTTTTTTCTCTTGTTTCTTCAACAGATCGGTTCAGAAACATGACGACCCAGCAAGTGAACCCTGCAGCAGTTGTCCCTGTCCCTTCTGCCTCAGTGGTTGGAAACGCCTTTGTGCATCAATATTACCATGTTCTCCACCAGTCGCCCCAAATGGTATTCAGGTTTTATCAGGATTCGAGCAAGCTTGGACGCCCAGAACCAAATGGAGAGATGAGCTGTACAACAACCATGGCGGCTATAAATGATAAGATTATCTCACTAGACTATAGTGACTATACAGCAGAGATAAAGACTGTGGACTCTCAGGATTCTTACAATCAGGGAGTCCTTGTACTAGTAACGGGCGCGTTGAATGGAAAAGATGGTCTAAAACGGAATTTCACACAGTCTTTCTTCCTTGCTCCTCAGGACAAGGGCTACTTTGTTTTAAACGATGTGTTCAGGTACTTGGACGAGCCTCCACAGCCAGAGACAGCTAACATATTTATTAATGGCATCCCGGAACAGACTTCCCAGGTTCCTGCTCCTGAGCCAGCTGCAGAGCCGGCACCTTCACCAGAACATGTAGTTGATCAACCGGTTGCTGAATTGGACGAAGAACCCCAGGTTGAAGAAGTATATGTGCAGTCAGACCATGGAGAAGGACCAGTGGCAGTAGAGGAAGCTCCAAATGTGCAGGTTCATGAAAGTGTTCAGAATGAGCAGCCGCCAGTTGTTGAAGTTCCCGTTTTAGCCCAAGAAGAAGCACCTAAGAAATCCTATGCGTCAATCGTGAAGGTTCAGGCACCAGTGCAGGCACCAGTTCAGGCACCATCTATCCCAAGGACAATACCAGTAAATGTTGAACGACAAGCAACTGCTCCTACACAAACACCGATTCCCTCTGAATCATCGGGTCCTTCTGCTCCCAATCCTACAGAGAACAATAATTCTCATGAAGCAGAAGGTGATGGGCGATCGATCTACATTAAAAATTTGCCTTTGAACGCTACCAGTTCCCAACTTGAAGAAGAGTTCAAGAAGTTTGGGTCTATTAAGCCTGACGGTGTCCAAGTTAGAAGCAACAAGCAACAAGGCTTCTGTTATGGTTTCGTGGAATTTGAGTCATCAAGTTCTATGCATAGTGCTATAGAGGCATCGCCAATTAATATTGGTGGACGCCCAGCATATGTTGAGGAGAAGAGGCCTGCTGGCCCCAGAGCTATACGTGGACGGTTCCCACCTGGAAGAGGTGGCTTTCGAAATGATGTTGTGAGGGGGCGTGGTGGTTATGGAGGTCGTGGCTATGGAAGAGGTGATTTTGTAAACAGAGGTGATTTTTCTGGTCGAGGGCGAGGTTCTTCTGGGCGTGGTGGTTCTGAAGGATACCAAAGGGTTGATCAATTTGGCAATGGTAGCAGGGGTGCTCGGCCTAGTGGTCCAAATCAGATGTCCAGAAATGGGCAGAGGGCTGGCTCTGTTGCTGCATGATGTGTTTTAAAATTGAAAATATGACTGACCAGATTGTGTATTGTGTTGAGTTCACACTCAAGTTGATAGTGTTAAAGGTTTTTAAGATATGAAAGCGAAGCTCCGGTTTTTGAGGTAATGAGATACTGTTTTTGGCAATGGCATTGGTTTGCCTCATTGGTTTTCGACATGGATCAGCTATACAGGGGTTCCTGGGGCAGAATGCACCAAGGCAATCAATTGTGTTAGAAAATTTTAATCTCATTTACGGCAATCAATTGTGTTAGAAAATTTTACTCTCATCTTCTTGCACGTTAGTGAAAATTTTAGAATTGATATATCCATTGTAGGGTCTTGGGAAAATTAAATTGTGAACCTTTCTCTCATTGGAACAAGAGCAGAAAGTTTTATATTGTACCGTGGTTCAGAAGCTATTTCTTAGAATATTCATACATTCAATACATTCAATTTTGTTTAGAAGAGAATACCCCTGATATTATGTTGACTCGTGTGATATCATTCCTTACGGGAGTGACCATTCAAACAGATACTGGCCAATATTTTTTTGGTCTTTACATATTTGCATTAGATGGTTGAACTGGGCAACAATGCAATCATCTTATTTGTATGACTAAATACTAAACTTCACACCTATTTGCAATTAGCTTTATTTGTATGTGATGGTAGCTGGAAATGTACCAAATTATACGAAGAT

Ace file of the UniGene sp_v1.1_unigene13652

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] dbj\|BAB10647.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL32982.1\| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb\|AAO23575.1\|	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	rna binding	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	63%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	63%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	63%
Blast2go	intracellular	GO:0005622	Cellular Component	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK80

Fln msg:

Fln protein: MTTQQVNPAAVVPVPSASVVGNAFVHQYYHVLHQSPQMVFRFYQDSSKLGRPEPNGEMSCTTTMAAINDKIISLDYSDYTAEIKTVDSQDSYNQGVLVLVTGALNGKDGLKRNFTQSFFLAPQDKGYFVLNDVFRYLDEPPQPETANIFINGIPEQTSQVPAPEPAAEPAPSPEHVVDQPVAELDEEPQVEEVYVQSDHGEGPVAVEEAPNVQVHESVQNEQPPVVEVPVLAQEEAPKKSYASIVKVQAPVQAPVQAPSIPRTIPVNVERQATAPTQTPIPSESSGPSAPNPTENNNSHEAEGDGRSIYIKNLPLNATSSQLEEEFKKFGSIKPDGVQVRSNKQQGFCYGFVEFESSSSMHSAIEASPINIGGRPAYVEEKRPAGPRAIRGRFPPGRGGFRNDVVRGRGGYGGRGYGRGDFVNRGDFSGRGRGSSGRGGSEGYQRVDQFGNGSRGARPSGPNQMSRNGQRAGSVAA*

Protein Length: 478

Fln nts: ATGGGGACTAAGATGAAGGGGGACTTTGTTCACCGATAAAATACACTTTTATTTATGCATTGCAATAAAAGCTTCGTGGGCTTGGATGGGGATCGGAAAAAGCATTAGAACAAAGCCTCCCCCGCCCTCTGTGGTTATTAAGGTATCCTTATATAGGAGAAAGAGATCTGACCCATCTGCTATAAGGCCTTTCCCTGATCTATTTCTCCATATTTGGGTTCCAAGGAAATCTGTGCACTGGGGGCTCTGTGACACACAGAGGGCATCGGTCAAAGGAGCCTCTCTACTGGTTTCACTTACCCAAGGCAAACATTTGCTTGGTTTTTTCTCTTGTTTCTTCAACAGATCGGTTCAGAAAC_-_ATGACGACCCAGCAAGTGAACCCTGCAGCAGTTGTCCCTGTCCCTTCTGCCTCAGTGGTTGGAAACGCCTTTGTGCATCAATATTACCATGTTCTCCACCAGTCGCCCCAAATGGTATTCAGGTTTTATCAGGATTCGAGCAAGCTTGGACGCCCAGAACCAAATGGAGAGATGAGCTGTACAACAACCATGGCGGCTATAAATGATAAGATTATCTCACTAGACTATAGTGACTATACAGCAGAGATAAAGACTGTGGACTCTCAGGATTCTTACAATCAGGGAGTCCTTGTACTAGTAACGGGCGCGTTGAATGGAAAAGATGGTCTAAAACGGAATTTCACACAGTCTTTCTTCCTTGCTCCTCAGGACAAGGGCTACTTTGTTTTAAACGATGTGTTCAGGTACTTGGACGAGCCTCCACAGCCAGAGACAGCTAACATATTTATTAATGGCATCCCGGAACAGACTTCCCAGGTTCCTGCTCCTGAGCCAGCTGCAGAGCCGGCACCTTCACCAGAACATGTAGTTGATCAACCGGTTGCTGAATTGGACGAAGAACCCCAGGTTGAAGAAGTATATGTGCAGTCAGACCATGGAGAAGGACCAGTGGCAGTAGAGGAAGCTCCAAATGTGCAGGTTCATGAAAGTGTTCAGAATGAGCAGCCGCCAGTTGTTGAAGTTCCCGTTTTAGCCCAAGAAGAAGCACCTAAGAAATCCTATGCGTCAATCGTGAAGGTTCAGGCACCAGTGCAGGCACCAGTTCAGGCACCATCTATCCCAAGGACAATACCAGTAAATGTTGAACGACAAGCAACTGCTCCTACACAAACACCGATTCCCTCTGAATCATCGGGTCCTTCTGCTCCCAATCCTACAGAGAACAATAATTCTCATGAAGCAGAAGGTGATGGGCGATCGATCTACATTAAAAATTTGCCTTTGAACGCTACCAGTTCCCAACTTGAAGAAGAGTTCAAGAAGTTTGGGTCTATTAAGCCTGACGGTGTCCAAGTTAGAAGCAACAAGCAACAAGGCTTCTGTTATGGTTTCGTGGAATTTGAGTCATCAAGTTCTATGCATAGTGCTATAGAGGCATCGCCAATTAATATTGGTGGACGCCCAGCATATGTTGAGGAGAAGAGGCCTGCTGGCCCCAGAGCTATACGTGGACGGTTCCCACCTGGAAGAGGTGGCTTTCGAAATGATGTTGTGAGGGGGCGTGGTGGTTATGGAGGTCGTGGCTATGGAAGAGGTGATTTTGTAAACAGAGGTGATTTTTCTGGTCGAGGGCGAGGTTCTTCTGGGCGTGGTGGTTCTGAAGGATACCAAAGGGTTGATCAATTTGGCAATGGTAGCAGGGGTGCTCGGCCTAGTGGTCCAAATCAGATGTCCAGAAATGGGCAGAGGGCTGGCTCTGTTGCTGCATGA___TGTGTTTTAAAATTGAAAATATGACTGACCAGATTGTGTATTGTGTTGAGTTCACACTCAAGTTGATAGTGTTAAAGGTTTTTAAGATATGAAAGCGAAGCTCCGGTTTTTGAGGTAATGAGATACTGTTTTTGGCAATGGCATTGGTTTGCCTCATTGGTTTTCGACATGGATCAGCTATACAGGGGTTCCTGGGGCAGAATGCACCAAGGCAATCAATTGTGTTAGAAAATTTTAATCTCATTTACGGCAATCAATTGTGTTAGAAAATTTTACTCTCATCTTCTTGCACGTTAGTGAAAATTTTAGAATTGATATATCCATTGTAGGGTCTTGGGAAAATTAAATTGTGAACCTTTCTCTCATTGGAACAAGAGCAGAAAGTTTTATATTGTACCGTGGTTCAGAAGCTATTTCTTAGAATATTCATACATTCAATACATTCAATTTTGTTTAGAAGAGAATACCCCTGATATTATGTTGACTCGTGTGATATCATTCCTTACGGGAGTGACCATTCAAACAGATACTGGCCAATATTTTTTTGGTCTTTACATATTTGCATTAGATGGTTGAACTGGGCAACAATGCAATCATCTTATTTGTATGACTAAATACTAAACTTCACACCTATTTGCAATTAGCTTTATTTGTATGTGATGGTAGCTGGAAATGTACCAAATTATACGAAGAT

Fln Alignment:

sp_v1.1_unigene13652___MTTQQVNXXXXXXXXXXXXXGNAFVHQYYHVLHQSPQMVFRFYQDSSKLGRPEPNGEMSCTTTMAAINDKIISLDYSDYTAEIKTVDSQDSYNQGVLVLVTGALNGKDGLKRNFTQSFFLAPQDKGYFVLNDVFRYLDEPPQPETANIFINGIPEQTSQV-XXXXXXXXXXXXXXHVVDQPVAELDEEPQVEEVYVQSDHGEGPVAVEEAPNVQVHESVQNXXXXXXXXXXXXXXXXXKKSYASIVKXXXXXXXXXXXXSIPRTIPVNVERQATAPTQTPIPSESSGPSAPNPTENNNSHEAEGDGRSIYIKNLPLNATSSQLEEEFKKFGSIKPDGVQVRSNKQQGFCYGFVEFXXXXXXXXXXXXXPINIGGRPAYVEEKXXXXXXXXXXXXXXXXXXXXNDVVXXXXXXXXXXXXXXDFVNXXXXXXXXXXXXXXXXXXXYQRVDQFGNGSRGARPSGPNQMSRNGQRAGSVAA
B8LK80_______________MATQQVSPAAAVPPASVV--GNAFVHQYYHVLHQSPQMVFRFYQDSSKLGRPEPNGEMSCTTTMTAINEKIISLDYSDYTAEIKTVDSQDSYSQGVLVLVTGALNGKDGVKRNFTQSFFLAPQDKGYFVLNDVFRYLDEPPQPETTNVFINGITEQTSKVPAPEPAAEPAPPQELHVVDQPVSELEEEPQVEEIYVQSDHEEGPVAVEEAPHLQVLESVQNEQQPAAEVPVLAQEEAPKKSYASIVKVQAPVQAPVQAPSIPRTIPVNVERQATAPIQTPIPSESSGPSAPNSTENNSSLEAEADGRSIYIKNLPLNATSSQLEEEFKKFGPIKPDGVQVRSNKQQGFCYGFVEFESSSSMQSAIEASPITIGGRPAYVEEKRPAGPRAIRGRFPPGRGAFRNDGVRGRGGYGGRGYGRGDFANRGDFAGRGRGSSGRGGSEGYQRVDQFGNGSRGARPSGANQMSRNGQRVGSVAA

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
105		88	11		0.923564
114	44	55			1.0
152			9	54	1.0
193		20		80	0.999996
197		60		40	1.0
351		35	64		1.0
383	52	47			1.0
640		12		87	0.992554
955	15	84			0.999986
1066	90		10		0.90298
1106	10		90		0.90298
1255	10			90	0.90298
1286		10		90	0.90298
1328		10	90		0.90298
1332	90	10			0.90298
1389	90		10		0.90298
1600		12		87	0.992554
1618			12	87	0.992554
1652			90	10	0.90298
1926		14	85		1.0
1928		85		14	1.0
1929	85	14			1.0
1930	85		14		1.0
1933	14		85		1.0
1935	85	14			1.0
1942		14		85	1.0
1943	14		85		1.0
2267	80	20			0.995493
2268			25	75	0.996473
2269		25		75	0.996473
2273			25	75	0.996473
2278	25			75	0.996473
2279		75	25		0.996473
2280	50		50		1.0
2281		25		75	0.996473
2282		25	75		0.996473
2284	33		66		0.997452
2286			33	66	0.997452
2369		20	80		0.995493
2411		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain