SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13642

Length: 1151 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13642 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthranilate synthase component II n=3 Tax=Zea mays RepID=B6UGS8_MAIZE	-	-	65%
FL-Next	sp=Anthranilate synthase component II; Cyanophora paradoxa. Plastid; Cyanelle.	-	-	59%
Blast2go	anthranilate synthase component ii	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Anthranilate synthase.	EC:4.1.3.27	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	84%
Blast2go	Biosynthesis of phenylpropanoids	01061	84%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	84%
Blast2go	response to salt stress	GO:0009651	Biological Process	84%
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	84%
Blast2go	response to bacterium	GO:0009617	Biological Process	84%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	84%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	84%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	84%
Blast2go	anthranilate synthase activity	GO:0004049	Molecular Function	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Carbamoyl-phosphate synthase, GATase domain	IPR001317	-	84%
Blast2go	Anthranilate synthase component II/delta crystallin	IPR006220	-	84%
Blast2go	Anthranilate synthase, glutamine amidotransferase	IPR006221	-	84%
Blast2go	Glutamine amidotransferase superfamily	IPR011702	-	84%
Blast2go	Glutamine amidotransferase type 1	IPR017926	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P48261

Fln msg: your sequence is longer than subject: 304 - 190

Fln protein: MMMATAFSASPGLIGSRLDTAMTKSEPSHSKLVKFSPSQSSIATKFLANSNDFSSVSLRIKGAYPAQATKTKEIEMPIDLPEHGKPEPTILVIDNYDSFTYNLCQYLGDLGAGFEVCRNDELTVEEVRKKNPRGILISPGPGTPHDSGISLQTVYELGPTIPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSLIHYDEKGEGGIFVGLPSPFTAGRYHSLVIEKESFPHDELEITAWTDDGLIMGVRHKKYRHIQAVQFHPESIITPEGKKIVQNFINIIEQHKILLTTGSCMGESPSIVG*

Protein Length: 305

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAGATGTTTCCGGTATTAAAAGTCTCGCTCAGTTCACAGGCATTAGAATTTCTCTGCAATTATC_-_ATGATGATGGCCACCGCATTTTCAGCTTCTCCTGGTTTGATAGGATCAAGGTTGGACACGGCCATGACTAAAAGTGAACCGAGTCACAGCAAACTCGTCAAGTTCAGCCCTTCCCAAAGCTCTATTGCCACAAAATTTCTGGCGAACTCAAATGATTTCTCTTCGGTTTCCTTGAGAATCAAAGGTGCTTACCCTGCACAAGCGACAAAAACCAAAGAGATCGAAATGCCCATTGATTTGCCAGAACATGGTAAACCCGAGCCGACTATTTTGGTGATCGATAACTATGATAGTTTCACTTACAATCTTTGCCAGTACCTTGGAGACCTTGGCGCTGGTTTTGAAGTCTGTCGAAATGATGAGTTGACAGTGGAAGAAGTAAGAAAGAAAAATCCAAGAGGAATTCTTATTTCACCTGGACCTGGCACACCGCATGATTCGGGAATTTCATTACAAACTGTTTATGAACTTGGACCTACAATCCCTTTATTTGGAGTTTGCATGGGCCTACAGTGCATTGGCGAAGCATTTGGAGGAAAAATCGTTCGTTCTCCTTTTGGAGTCATGCATGGAAAAAGTTCATTGATACATTATGATGAGAAAGGAGAAGGGGGCATATTTGTAGGACTTCCTAGCCCTTTCACGGCTGGCCGGTATCACAGCCTTGTGATTGAAAAGGAAAGCTTTCCCCACGATGAACTTGAGATTACAGCCTGGACTGATGATGGTCTTATCATGGGTGTTCGCCATAAGAAGTACAGACATATTCAGGCTGTTCAATTCCACCCAGAAAGTATTATCACTCCTGAAGGGAAAAAGATTGTTCAAAATTTTATCAACATTATAGAACAGCATAAGATTCTCCTGACTACTGGCTCATGTATGGGAGAAAGTCCGAGTATAGTAGGATAG___CAATGTTGAGAGGTAAAAAATTGGTTTATGCTTTAGGCATAAGTTGACAGTAAAACCAAAGAATTGGGGTGTTAACTTTTATCTGCTTGTTACAAATTTACGTAATTTAAATTATGTCAATAAAGAACAGGTCTGATTTAGGATGACAC

Fln Alignment:

sp_v1.1_unigene13642___ILVIDNYDSFTYNLCQYLGDLGAGFEVCRNDELTVEEVRKKNPRGILISPGPGTPHDSGISLQTVYELGPTIPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSLIHYDEKGEGGIFVGLPSPFTAGRYHSLVIEKESFPHDELEITAWTDDGLIMGVRHKKYRHIQAVQFHPESIITPEGKKIVQNFINII
P48261_______________ILLIDNYDSFTYNLAQYLSELNIKVLVKRNDKITLDEIKNLNIQGIIISPCPGGPEDSGISQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIKAP-KLIHGKPSIIFHDGK---GVFQNLKNPITATRYHSLIIEKESCP-DELEITAWTEDGLIMGIQHKKYKQLQGIQFHPESILTESGKQILQNFINCL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1063	88	11			0.923564
1064		11		88	0.923564
1065		11	88		0.923564
1083		85	14		0.993533
1086	85	14			0.993533
1087		14		85	0.993533
1088		14	85		0.993533
1090	14	85			0.993533
1099		25		75	0.996473
1100		25	75		0.996473
1102			75	25	0.996473
1128	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain