SustainPineDB

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Assembly info
Unigenes
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Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13627

Length: 489 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13627
CTCCAGCAGCTGCTGGTGGTGGGGTCACCCTTGTTATGGCTTACCTCAATGGAAATGATATCCCCAATCTGCTTCATCTGAGAACTCTGGTTACAAAGATTTTGGGCACTATTTGTACGGTGTCTTCTGGTCTGCCTTTAGGTCAAGAAGGACCCATGGTGCACATTGGTGCAGCTGTTGCTTCTACCCTAACATGGATGCATGGCAAGTTTCCGAGCCAAAAGAAGTGTGATTCCAAAAAATCATGTTTCAGCAAGTTTCATCCACGAGCATGGCCTTTTGATTTCCACAATGACAAGGACCGTCGGGAATTTGTATCTGCTGGCACTGCTGCTGGGCTGGCAGCGGCATTTGGTTCTCCTATAGGTGGTGTTCTTTATTCATTGGAGGAAGCCTCAAGCTTTTGGTCAAGAAAGGTCATGTGGCGATCTCTGGTTTGCACCACAGTTGCGACAATGCTGCTTTCATGGCTTCATGAGAAAGAGTTCT

Ace file of the UniGene sp_v1.1_unigene13627

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloride Channel (ClC) Family	-	-	6.0e-25	39%
FL-Next	sp=Chloride channel protein CLC-d; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Blast2go	chloride channel family	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	66%
Blast2go	chloride transport	GO:0006821	Biological Process	66%
Blast2go	voltage-gated chloride channel activity	GO:0005247	Molecular Function	66%
Blast2go	integral to membrane	GO:0016021	Cellular Component	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chloride channel, voltage gated	IPR001807	-	0.0	66%
Blast2go	Chloride channel, core	IPR014743	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92943

Fln msg: Distance to subject end: 497 aas, your sequence is shorter than subject: 162 - 792

Fln protein: PAAAGGGVTLVMAYLNGNDIPNLLHLRTLVTKILGTICTVSSGLPLGQEGPMVHIGAAVASTLTWMHGKFPSQKKCDSKKSCFSKFHPRAWPFDFHNDKDRREFVSAGTAAGLAAAFGSPIGGVLYSLEEASSFWSRKVMWRSLVCTTVATMLLSWLHEKEF

Protein Length: 163

Fln nts: CTCCAGCAGCTGCTGGTGGTGGGGTCACCCTTGTTATGGCTTACCTCAATGGAAATGATATCCCCAATCTGCTTCATCTGAGAACTCTGGTTACAAAGATTTTGGGCACTATTTGTACGGTGTCTTCTGGTCTGCCTTTAGGTCAAGAAGGACCCATGGTGCACATTGGTGCAGCTGTTGCTTCTACCCTAACATGGATGCATGGCAAGTTTCCGAGCCAAAAGAAGTGTGATTCCAAAAAATCATGTTTCAGCAAGTTTCATCCACGAGCATGGCCTTTTGATTTCCACAATGACAAGGACCGTCGGGAATTTGTATCTGCTGGCACTGCTGCTGGGCTGGCAGCGGCATTTGGTTCTCCTATAGGTGGTGTTCTTTATTCATTGGAGGAAGCCTCAAGCTTTTGGTCAAGAAAGGTCATGTGGCGATCTCTGGTTTGCACCACAGTTGCGACAATGCTGCTTTCATGGCTTCATGAGAAAGAGTTCT

Fln Alignment:

sp_v1.1_unigene13627___PAAAGGGVTLVMAYLNGNDIPNLLHLRTLVTKILGTICTVSSGLPLGQEGPMVHIGAAVASTLTWMHGKFPXXXXXXXXXXXXXXXHPRA-WPFDFHNDKDRREFVSXXXXXXXXXXXXSPIGGVLYSLEEASSFWSRKVMWR----SLVCTTVATMLLSW
P92943_______________PAAAGSGIPEIKGYLNGIDIPGTLLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLL---------------GQGGSTKYHLNSRWPQLFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain