SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13623

Length: 2202 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13623
CGTCGTGACCTTGGCTGTCACTCAGTGTTTTCGGAGTCTAGTGGTCCAACTATAATACAGAGTAGAGTTGTTTGATGGTAGGCAATCCTGGTGATCGGAGCCACATACCCACGCATATATCTAAATTAATAATAAGGACCTCTGGGTGGTTGGTTGCTCATACGGACACTCAACTCTCGCGGACCCTTTAACCTATTTTGAGTCCGCTGTGAGAACTAAAGGGATTTATCGCGTCCAAGTGTTTTTCTAATGTTATAATACAATTTCTGCATCATTCGGATGGGTACAGTATGCTATCTAATTCTCTGTCAGATAAACAATCGCGAATGCCCATTTTAAGATTTCCGAGGAGTGTTTCTATCTTCAGGCTGTGAGGTCCGTTTTCCAGAAGTTTGTTTCGTCATTTTCACAGGTCTATTATCTCTTATTCTATCCTTCTTTGCATGCAAGTAAATAAATCAGATGGAAAGCTCGGCGGATATCGAAAAGCAGGGTAAGATTGCTTCTTTTGTTGAAATAGTTGGGGATTCCACAGACAAAGCACGACAGTTTTTGCAGGCAACCAACTGGCAGCTAGAGGAAGCAATACAGCTATTCTATGCTGATAATGAAGGTGGAGCTGGGACACCTTTAACTGTTCCATCAGAAAGTGGTTCTCAGGCATCTCCACCAGCTCAAAACATGCAAAACAATACAGCGGGTGAATATGTACGTCCACCATTACCTGTTAAGAGGGAAGCATTGTACGATGATGTTTTCCAATATAGAGCACAACGGTTGGCACAGTTATCCAATCAACCAAATTCTGTGGATGCATTTCGGAACTTTGAGGATGAGGCAAAATATCGCTCTGTGTGGGCATCTGATCCAAATGGAAACTCTTCGATGGATGGGGCCAAAGATAATCTTGCAGCTCTTTATCGGCCACCTTTTGCACTGATGTTCCAAGGCAGTTTTGAGCAGGCAAAATTAGAGGCTTCGGGACAGGTAAAATGGCTTCTAGCAAATGTACAATCCACTAAAGAGTTCAGCTCTTACATGCTTAACAGGGACACATGGGCCAATGAAGCCATCAAGGAGACTATCAATACGAGTTTCATTTTCTGGCAGATATATGATGACACTGAAGAGGGAAGAAAGGTGTGCACCTACTATCATTTGACAAAGATGCCAACAACACTTGTTATTGATCCTATCACTGGACAAAAAATGCGAGCTTGGAATGGCATGATTGATCCAGAGCGATTGTTAGAGGACTTGATACCTTACATGGATAAGGGCCCCATGGAACGCCATCCAACCCTTCCTCATAAAAGACAAAGAGAAGTTGATGAGAGGGCCGCATCAAATGCAAATGATAAACAAGAACTAGATGATGAACTGCGGCAAGCTTTGGCTGCTTCTCTGGAGGGCATAGATCAGCCTGTGGTTGGAGTGGATGGTTCTCAAGCCTCACATGAGCACTCAAAAGACGAAGTTACAGATAATCATGAAGTACCAACTGCATCCTCACAAAAAGTCAAACGTCAGTACCCACCTCTCCCAGAGGAGCCACAAGGTGATAAAGGAGTGATTTGTAGGGTACGTGTCCGTTTCCCTGATGGCAAGAGGGTGCAGAGGAGGTTTCTGTGCACTGATCCAATACAGTTGCTTTGGTCTTTCTGCTGCTCTCAAGTTAAAGAAGCTGCAGATGGCCGGCGATTTAGATTGGCTCACACAGTTCCAGGTGCAGCAGAAACATTAGATTATGATAGCAGCTTCAGCTTTGAAAATTCTGGAGTTTCCAATTCAGTCATTTCAATGACCTGGGAATGATATTTGGTTACCATGAACACTACATAGTTTTGGGCCATTTTGCCTGCTTTGTAATTTTACTTGTAAAAATTTCATCCTTCAATCTTCAATCATTTCCGGATTTGTCTGTTGATATATCATCCACTGTGCTTCTGTTTTATAAAAAGAAATTACAAGGTGTTCATTATTCATGTTTGATTGTGTTGGCTATTCGGAAAGAAGACATTGTTACATTTGTTGTCTGAGGTCTTATGTGATATCAGCAAATTTCCAGTAGTAAGGCCTGCTTTTATGTAAATTGTTTTGCCAACATCGTATATTATCATTGGTTGTGTAAAAAGATTGAAATTGCAAGATGCTCCCATTTATCAACGATATGACTGGATGTTTACATGGTATTATTCATAG

Ace file of the UniGene sp_v1.1_unigene13623

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UBX domain-containing protein, putative	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	53%
Blast2go	ubx domain-containing protein	-	-	60%

Source	InterPros	Term	Type	Identity
Blast2go	UBX	IPR001012	-	60%
Blast2go	UAS	IPR006577	-	60%
Blast2go	UBA-like	IPR009060	-	60%
Blast2go	Thioredoxin fold	IPR012335	-	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TAI6

Fln msg:

Fln protein: MESSADIEKQGKIASFVEIVGDSTDKARQFLQATNWQLEEAIQLFYADNEGGAGTPLTVPSESGSQASPPAQNMQNNTAGEYVRPPLPVKREALYDDVFQYRAQRLAQLSNQPNSVDAFRNFEDEAKYRSVWASDPNGNSSMDGAKDNLAALYRPPFALMFQGSFEQAKLEASGQVKWLLANVQSTKEFSSYMLNRDTWANEAIKETINTSFIFWQIYDDTEEGRKVCTYYHLTKMPTTLVIDPITGQKMRAWNGMIDPERLLEDLIPYMDKGPMERHPTLPHKRQREVDERAASNANDKQELDDELRQALAASLEGIDQPVVGVDGSQASHEHSKDEVTDNHEVPTASSQKVKRQYPPLPEEPQGDKGVICRVRVRFPDGKRVQRRFLCTDPIQLLWSFCCSQVKEAADGRRFRLAHTVPGAAETLDYDSSFSFENSGVSNSVISMTWE*

Protein Length: 452

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTTTCGGAGTCTAGTGGTCCAACTATAATACAGAGTAGAGTTGTTTGATGGTAGGCAATCCTGGTGATCGGAGCCACATACCCACGCATATATCTAAATTAATAATAAGGACCTCTGGGTGGTTGGTTGCTCATACGGACACTCAACTCTCGCGGACCCTTTAACCTATTTTGAGTCCGCTGTGAGAACTAAAGGGATTTATCGCGTCCAAGTGTTTTTCTAATGTTATAATACAATTTCTGCATCATTCGGATGGGTACAGTATGCTATCTAATTCTCTGTCAGATAAACAATCGCGAATGCCCATTTTAAGATTTCCGAGGAGTGTTTCTATCTTCAGGCTGTGAGGTCCGTTTTCCAGAAGTTTGTTTCGTCATTTTCACAGGTCTATTATCTCTTATTCTATCCTTCTTTGCATGCAAGTAAATAAATCAG_-_ATGGAAAGCTCGGCGGATATCGAAAAGCAGGGTAAGATTGCTTCTTTTGTTGAAATAGTTGGGGATTCCACAGACAAAGCACGACAGTTTTTGCAGGCAACCAACTGGCAGCTAGAGGAAGCAATACAGCTATTCTATGCTGATAATGAAGGTGGAGCTGGGACACCTTTAACTGTTCCATCAGAAAGTGGTTCTCAGGCATCTCCACCAGCTCAAAACATGCAAAACAATACAGCGGGTGAATATGTACGTCCACCATTACCTGTTAAGAGGGAAGCATTGTACGATGATGTTTTCCAATATAGAGCACAACGGTTGGCACAGTTATCCAATCAACCAAATTCTGTGGATGCATTTCGGAACTTTGAGGATGAGGCAAAATATCGCTCTGTGTGGGCATCTGATCCAAATGGAAACTCTTCGATGGATGGGGCCAAAGATAATCTTGCAGCTCTTTATCGGCCACCTTTTGCACTGATGTTCCAAGGCAGTTTTGAGCAGGCAAAATTAGAGGCTTCGGGACAGGTAAAATGGCTTCTAGCAAATGTACAATCCACTAAAGAGTTCAGCTCTTACATGCTTAACAGGGACACATGGGCCAATGAAGCCATCAAGGAGACTATCAATACGAGTTTCATTTTCTGGCAGATATATGATGACACTGAAGAGGGAAGAAAGGTGTGCACCTACTATCATTTGACAAAGATGCCAACAACACTTGTTATTGATCCTATCACTGGACAAAAAATGCGAGCTTGGAATGGCATGATTGATCCAGAGCGATTGTTAGAGGACTTGATACCTTACATGGATAAGGGCCCCATGGAACGCCATCCAACCCTTCCTCATAAAAGACAAAGAGAAGTTGATGAGAGGGCCGCATCAAATGCAAATGATAAACAAGAACTAGATGATGAACTGCGGCAAGCTTTGGCTGCTTCTCTGGAGGGCATAGATCAGCCTGTGGTTGGAGTGGATGGTTCTCAAGCCTCACATGAGCACTCAAAAGACGAAGTTACAGATAATCATGAAGTACCAACTGCATCCTCACAAAAAGTCAAACGTCAGTACCCACCTCTCCCAGAGGAGCCACAAGGTGATAAAGGAGTGATTTGTAGGGTACGTGTCCGTTTCCCTGATGGCAAGAGGGTGCAGAGGAGGTTTCTGTGCACTGATCCAATACAGTTGCTTTGGTCTTTCTGCTGCTCTCAAGTTAAAGAAGCTGCAGATGGCCGGCGATTTAGATTGGCTCACACAGTTCCAGGTGCAGCAGAAACATTAGATTATGATAGCAGCTTCAGCTTTGAAAATTCTGGAGTTTCCAATTCAGTCATTTCAATGACCTGGGAATGA___TATTTGGTTACCATGAACACTACATAGTTTTGGGCCATTTTGCCTGCTTTGTAATTTTACTTGTAAAAATTTCATCCTTCAATCTTCAATCATTTCCGGATTTGTCTGTTGATATATCATCCACTGTGCTTCTGTTTTATAAAAAGAAATTACAAGGTGTTCATTATTCATGTTTGATTGTGTTGGCTATTCGGAAAGAAGACATTGTTACATTTGTTGTCTGAGGTCTTATGTGATATCAGCAAATTTCCAGTAGTAAGGCCTGCTTTTATGTAAATTGTTTTGCCAACATCGTATATTATCATTGGTTGTGTAAAAAGATTGAAATTGCAAGATGCTCCCATTTATCAACGATATGACTGGATGTTTACATGGTATTATTCATAG

Fln Alignment:

sp_v1.1_unigene13623___MESSADIEKQGKIASFVEI-VGDSTDKARQFLQATNWQLEEAIQLFYADNEGGAG------------TPLTVPSESGSQASPPAQNMQNNTAGEYVRPPLPVKREALYDDVFQYRAQRLAQLSNQPNSVDAFRNFEDEAKYRSVWASDPNGNSSMDGAKDNLAALYRPPFALMFQGSFEQAKLEASGQVKWLLANVQSTKEFSSYMLNRDTWANEAIKETINTSFIFWQIYDDTEEGRKVCTYYHLTKMPTTLVIDPITGQKMRAWNGMIDPERLLEDLIPYMDKGPMERHPTLPHKRQREVD----ERAASNANDKQELDDELRQALAASLEGIDQPVVGVDGSQASHEHSKDEVTDNHEVPTASSQKVKRQYPPLPEEPQGDKGVICRVRVRFPDGKRVQRRFLCTDPIQLLWSFCCSQVKEAADGRRFRLAHTVPGAAETLDYDSSFSFENSGVSNSVISMTWE
D7TAI6_______________MESILSADKQSMVSSFLEIAVGQSADTARQFLQATSWKLEEAIQLFYVGNEGGTMAASSYSPPIENISPLPDQSSSGSRKDIENENVVQDD-GDEVRPPLPVIREALYDDAMLYGVSRGGYPSHEASSLVAFRNFDDEMKRPGIWESEKGATSTAENSRDNLASLYRPPFALMHHGPFEKAKVAAAGQDKWLLVNLQSTTEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVIDPITGQKMRSWCGMIQPERLLEDLLPFMDGGPKDHHVTLSHKRPRESSLTPPQKIQVAADETNEEDEEVQLALAASMASMKDP-------SGLTSKEKDVTTTDKKEEMCSAK--KPEYPPLPEEPKGDRNLLCRVGVRLPDGRRIQRNFLRTDPIQLLWSFCYSQLEEVV-SRPFHLTQAIPGASQNLDYDRELTFEESGLANSMISVTWE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1125		12		87	0.992554
1366	85		14		0.993533
1367	85		14		0.993533
1368	85		14		0.993533
1613	85		14		0.999981
1733		11	88		0.923564
1738			88	11	0.923564
1763	85		14		0.993533
1785	87			12	0.992554
1788		12		87	0.992554
1791	12	87			0.992554
2009		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain