SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13618

Length: 1591 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13618

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SMH903; single myb histone	-	-	2.0e-34	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	myb transcription factor	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	61%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	61%
Blast2go	response to salt stress	GO:0009651	Biological Process	61%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	61%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	61%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	61%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	61%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	61%
Blast2go	double-stranded telomeric DNA binding	GO:0003691	Molecular Function	61%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Blast2go	SANT/Myb domain	IPR001005	-	61%
Blast2go	Histone H1/H5	IPR005818	-	61%
Blast2go	Homeodomain-like	IPR009057	-	61%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	61%
Blast2go	Homeodomain-related	IPR012287	-	61%
Blast2go	Myb, DNA-binding	IPR014778	-	61%
Blast2go	Myb domain, DNA-binding	IPR017930	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA99

Fln msg:

Fln protein: MGAPKLKWTSEEESALRAGVVKYGTGKWRTILKDPEFAACLAARSNVDLKDKWRNLMSSLSPGGQGSKTPRPKLLAPVPISSAAPQSPVTTSSAAAASLDHVISTPKSISTSTAARNHSPRCDYDDMILEALTALRDPNGTDVATIASFMEERHQLPPSFRRALSSKLKRLVSQDKILRVRNSYKLKDLGEVNQAVEGPLVVFDGSMEVCSNGIDASSVDMINEASMAAAMKLAEADAMSALAEEAAKEAEMDLRLAEEADALLEAASSIFDDFTLDEVDGFYYS*

Protein Length: 287

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGATTCTGCTGTGGTTTTGGTTTATTGGGCGGGCGGGCTTTAGTTTTGTTTCGGCGATTTTGTTGAATTTTAGATCTGCCTGAATGATCATGATCGAACCTGGTTGAAGTCAGGGGATTGGTGGGTTTTGGCGGTGCAGGGTATTGGTCGGGTTTTGGCTTTGTTGGTTTTTGACAGCAGAGGGCATTGGTGGACTTTTAGAGTGGAGGGGGTTTTATCAGTGAAGGGTATTGGTGGGTGTTTGCCAGGAGTCTCAGAGCAGACCGGACAGAGGAGAAAGAGGCCATTTGAAGAAGAAACTGTAGATAGATACCTAGATACCTATCC_-_ATGGGTGCTCCTAAGTTGAAATGGACCTCTGAAGAGGAGAGTGCTCTGCGAGCAGGCGTGGTAAAGTATGGCACGGGCAAGTGGAGGACCATTCTCAAGGACCCAGAGTTTGCAGCCTGTCTTGCAGCTCGTTCCAATGTCGATTTGAAGGACAAATGGCGCAACCTTATGAGTAGCTTGAGTCCTGGTGGGCAGGGTTCCAAAACCCCTAGACCAAAGCTCCTTGCACCTGTTCCTATTTCTTCAGCTGCCCCTCAGTCTCCTGTAACGACATCCTCTGCAGCAGCAGCAAGTTTGGATCATGTGATTTCTACCCCTAAGAGTATTTCAACATCAACTGCTGCGAGGAATCATTCGCCGAGGTGTGATTACGATGACATGATTTTAGAAGCCCTTACAGCTCTGCGAGATCCGAACGGGACAGATGTTGCCACGATTGCAAGTTTCATGGAGGAGAGACACCAATTGCCCCCAAGTTTCAGGCGGGCTCTCTCTTCCAAGCTCAAGCGGTTAGTCTCGCAAGACAAGATTTTGAGGGTTCGTAACAGTTACAAGCTCAAAGATTTGGGAGAGGTGAATCAAGCAGTGGAAGGACCTCTGGTTGTATTTGATGGGTCGATGGAGGTATGCTCCAATGGCATCGATGCTTCTTCAGTGGACATGATAAATGAAGCTTCGATGGCTGCTGCCATGAAATTGGCAGAAGCAGATGCCATGTCTGCCTTGGCCGAAGAAGCAGCGAAGGAAGCAGAGATGGATTTAAGATTGGCAGAGGAAGCAGATGCGCTTCTTGAAGCGGCATCTTCAATATTTGATGACTTCACTCTGGACGAGGTGGATGGGTTTTATTATAGTTAG___TGTTTTTCTTAAGGATAAATGTTGATGTCTTTTCTTTTCTATTGCTTTACAGATTCGATATCTATGAACTCTAACTCTGTATTCAATGTAGTGTGCCATTTATGCACTTTATACAGACCATACATATCTGGTCGGTTGAGTACAGAACTCCAACTGCTCTGCATTATGCATTGAAATCCATTTTAATGTTGGAGCGAGTGGAACCTTCCCTTGGTATGAACCTGATTCAATGTTGAAATGATTGCTACTTTCAACTACTAAACCACAACCCATAGCTGAACAAAATTATAATTAATAGTCGATATTTTCAGTATTATGTACAGAATTTTGTTCTGGGCTGATTTTGATTAACATGCTTATTAATTGACACTATTTGTTCTTTTG

Fln Alignment:

sp_v1.1_unigene13618___MGAPKLKWTSEEESALRAGVVKYGTGKWRTILKDPEFAACLAARSNVDLKDKWRNLMSSLSPGGQGSKTPRPKLLAPVPIXXXXXXXXXXXXXXXXXX-------LDHVISTPKSISTSTAARNHSPRCDYDDMILEALTALRDPNGTDVATIASFMEERHQLPPSFRRALSSKLKRLVSQDKILRVRNSYKLKDLGEVNQAVEGPLVVFDGSMEVCSNGIDASSVDMIN
D5AA99_______________MGAPKQKWTSEEEGALRAGVEKYGSGKWQTILKDPEFAVCLASRSNVDLKDKWRNLMS-VTAGGQGSKTPRVKSIAAVPLSSVSPLSPTAPAAGMLVKSEATIPSADIVIYSPKSISAS--ARNHSPRCDYDDMILEALTALRDPNGIDVTTIASFMEERHQLPPSFRRTLGSKLKRLVSQEKIIRIRNSYKLKDMAEPRAAVLGPRNSADGLKQLWYNPMDAASLETIN

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
221		80		20	0.995493
222			20	80	0.995493
223			20	80	0.995493
224			20	80	0.995493
225			20	80	0.995493
587	14			85	0.993533
725		87	12		0.992554
727	87		12		0.992554
819		16		83	0.994512
895	25		75		1.0
897	75		25		1.0
898	75		25		1.0
899		75	25		1.0
902	11			88	0.923564
903			11	88	0.923564
904	88		11		0.923564
905		88	11		0.923564
906	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
629	640	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain