SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13589

Length: 1372 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13589 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	N-acetylglucosaminyltransferase, putative n=1 Tax=Musa acuminata RepID=Q1EP08_MUSAC	-	-	70%
FL-Next	tr=N-acetylglucosaminyltransferase, putative; Musa acuminata (Banana) (Musa cavendishii).	-	-	70%
Blast2go	beta- -n-acetylglucosaminyltransferase ii	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.	EC:2.4.1.101	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	N-Glycan biosynthesis	00510		79%
Blast2go	Various types of N-glycan biosynthesis	00513		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.	EC:2.4.1.143	-	79%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	79%
Blast2go	Various types of N-glycan biosynthesis	00513	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	oligosaccharide biosynthetic process	GO:0009312	Biological Process	79%
Blast2go	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	GO:0003827	Molecular Function	79%
Blast2go	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	GO:0008455	Molecular Function	79%
Blast2go	Golgi stack	GO:0005795	Cellular Component	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	N-acetylglucosaminyltransferase II	IPR007754	-	0.0	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q1EP08

Fln msg: Overlapping hits, possible frame ERROR between 760 and 738, your sequence is shorter than subject: 442 - 482

Fln protein: LFNKELYLPPQNNLSRELERRNSLPPLNIDLHPKLAKNHITIVLYVHNRPKYLQLVVDSLSKVQGIDETLLIVSHDGYFEEMNKIVEGIRFCQVKQIFAPYSPHLFVNSFPGVSPGDCQNKDDPLLTKCKGKADQYGNHRSPRIVSLKHHWWWMMNWVWDGMEETSRHTGHILFIEEDHFIFPNAYRNIQILSTLKQQKCVECYATNLAPSDVNYKGEKSENLIAEKMGNIGYAFNRTVWRKIHCxxxxxxxxxDDYNWDITMWAVVYPSFGTPVYSLRGPRRSAAHFGKCGLHQGTNKGVPCFDNGQATPAIEETDKVVNIKPEWEIYKYEHQGGYQAGFKGWGGWGDDRDHRLCLDFASMYHIAAFSHGSTRPGNKVMLSLTAFVTYRLFNDADVYLQWCKSQILCLKYCIHASQSTHTGIPACIGFPTVRNILVEKIT*

Protein Length: 443

Fln nts: CCTTTTCAATAAGGAACTCTATCTACCCCCTCAAAATAATTTATCCAGAGAGCTTGAAAGAAGAAACTCCTTGCCACCTCTTAACATAGATCTTCATCCAAAGTTGGCGAAAAATCATATAACGATTGTTCTGTATGTGCACAATAGACCAAAGTATTTGCAGTTAGTTGTAGATAGCCTTTCCAAAGTGCAGGGCATTGATGAGACGCTATTGATTGTAAGCCATGATGGGTATTTTGAGGAAATGAATAAGATAGTGGAAGGAATAAGGTTTTGCCAGGTAAAACAGATTTTTGCCCCCTATTCCCCTCACTTGTTTGTTAATTCATTTCCGGGCGTGTCACCTGGAGATTGCCAGAATAAGGATGACCCCTTACTTACAAAGTGTAAAGGAAAAGCTGATCAGTATGGAAACCATAGGTCTCCGAGAATAGTGTCTCTGAAGCACCATTGGTGGTGGATGATGAATTGGGTTTGGGATGGGATGGAAGAAACCAGTCGACACACTGGACATATACTTTTCATAGAAGAAGACCATTTTATTTTTCCCAATGCTTACAGAAATATTCAAATTTTATCTACATTGAAGCAACAGAAGTGTGTTGAGTGCTATGCTACAAATTTGGCTCCTTCTGATGTGAATTATAAGGGAGAAAAATCAGAGAATTTGATTGCCGAGAAGATGGGCAATATTGGGTATGCTTTCAATAGAACAGTCTGGAGAAAAATCCATTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGATTACAACTGGGATATAACCATGTGGGCAGTTGTGTATCCTTCGTTTGGCACTCCGGTTTACTCTTTGAGAGGGCCTAGGAGAAGTGCAGCTCACTTTGGAAAATGTGGCTTGCATCAGGGGACCAACAAGGGCGTTCCATGTTTTGACAATGGTCAGGCAACTCCTGCAATTGAAGAAACTGACAAAGTTGTTAATATAAAGCCTGAATGGGAGATATACAAGTATGAGCATCAAGGAGGTTACCAGGCTGGTTTTAAAGGTTGGGGGGGCTGGGGTGATGATAGGGATCATAGGCTGTGTCTTGATTTTGCCTCAATGTATCATATTGCAGCTTTCTCTCATGGCTCAACTAGACCTGGTAATAAAGTGATGCTTTCACTTACAGCTTTTGTGACATATCGGCTTTTCAATGATGCCGATGTCTACTTGCAATGGTGCAAGTCTCAAATACTTTGCCTTAAATATTGTATACATGCTTCCCAAAGCACACATACTGGAATACCAGCATGTATAGGATTTCCAACAGTAAGAAATATACTGGTGGAAAAAATTACTTAGAAATTGGCAGTTTTATGATTTTCCCCTGGTTATTCCTCAAGCTGAGA

Fln Alignment:

sp_v1.1_unigene13589___ELYLPPQNNLSRELERRNSLPPLNIDLHPKLAKNHITIVLYVHNRPKYLQLVVDSLSKVQGIDETLLIVSHDGYFEEMNKIVEGIRFCQVKQIFAPYSPHLFVNSFPGVSPGDCQNKDDPLLTKCKGKADQYGNHRSPRIVSLKHHWWWMMNWVWDGMEETSRHTGHILFIEEDHFIFPNAYRNIQILSTLKQQKCVECYATNLAPSDVNYKGEKSENLIAEKMGNIGYAFNRTVWRKIHCxxxxxxxxDDYNWDITMWAVVYPSFGTPVYSLRGPRRSAAHFGKCGLHQGTNKGVPCFDNGQATPAIEETDKVVNIKPEWEIYKYEHXXXXXXXXXXXXXXGDDRDHRLCLDFASMYHIAAFSHG
Q1EP08_______________ELKLPKQSILSMSLDQRNKLPPRNMDRFPNLAKDHTKIVLYVHNRPQYLRLVVSSLAAVEGISETMLIVSHDGYFAEMDRIVQDIRFCQAKQIFAPYSPHLFPDGFPGVSPGDCHDKDDPIVTKCNGTADQYGNHRSPRTVSLKHHWWWMMNTVWDGMEETKGFSGHILFIEEDHYIYPNAYRNLQLLIGLKPMKCPECYAANLSPMDVNSIGEGWDMLVAEKMGNVGYSFNRTVWRKIHTxxxxxxxxDEYNWDITMWATVYPSFGTPVYTLRGPRRSAAHFGKCGLHQGRGKSSSCIDNGEARFQLDEIDKILNIKPDWKVHVVKKQSGYQAGFKGWGGWGDERDRELCLSFAYMYHDVQISSG

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
600	90			10	0.90298
603	10			90	0.90298
606	90		10		0.90298
611			10	90	0.90298
613	90	10			0.90298
616	90		10		0.90298
619	90			10	0.90298
620		90	10		0.90298
621	90		10		0.90298
622	90			10	0.90298
624	90		10		0.90298
626	11			88	0.923564
627		77	11		0.968132
628		11	11	77	0.968132
629	11	88			0.923564
630	11		11	77	0.968132
631	11			88	0.923564
633	11	77			0.968132
634		88	11		0.923564
636		11		77	0.968132
639	12	37			1.0
641	66	22	11		0.999999
646	83			16	0.994512
647		16		83	0.994512
648	16			83	0.994512
649		16		83	0.994512
650			16	83	0.994512
651	16			83	0.994512
653			16	83	0.994512
667			16	83	0.994512
671	83	16			0.994512
676	16			83	0.994512
677	83		16		0.994512
678		83	16		0.994512
679		83		16	0.994512
682	83	16			0.994512
683			16	83	0.994512
686		16		83	0.994512
717		25		75	0.996473
1321		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain