SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13588

Length: 2610 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13588
TATCTATCTTCATTCAAGTTAGCAAACACATTTTTCATACATGCCCGCATGTTAGCAAATGTTTCAGGTGTTCCTGGCAATTAGGGCAGAATACAGAGACTTTGGGCACTATGGGATATTTTTCTCAGGGGAGTTTCTTAATTCAAGCACGGTCATTCATTTCACGACCACCCGAGTAATCCACATATCTGAGAGAGATGCAAGCTGCGCTTCTGGGGAATTTAGCTGTTTACCTTGGCAATTGGCACTGATAGAACGTTCGTGTGGAACTAGACTTTAAAAATGTCGTCTGGAGGGTTCTTGAATGCTCAGTTATCCAAGAAGACATCCATTTTTGGGATGAAACTCTGGGTCCTGATTGGTTTGGCTGTTGGAACATTCATTTTCTTAATTCTCTTTATGTTATCTCTTTGGCTTGGTTCTCGGAGAAAGTCGAGGAGAATACTAGAAAAGCTGCCCATTAACCAGATCCCAAAAGTTTCAAAGGAGATAAAAGAAGTAAAGGTTGATAGAAAAGGGATTAACAATCCTCCCCAAGGTGATGCAATTAGCTTCACTAATCAGGGCAATTCCAGCAAGAAAAATTCGGACAAAGTTTTTGTGCCCGTGGGGGTAAAGGGGTTTTCTGATGCAAAGAAGAGTAGTCCAGGGGGTTCCTCTCTTCAACAGAAGGGAGGAGTCTCACAATCAGTAGACGGGGGAAGCTCAGAGGCACATTCTATTTATAGAGGCTCCTCATCTTTTGCAACGAATACAGCTTCACCGATGAGTGGTATGCCTGAAGTCTCATATCTTGGATGGGGTTATTGGTTTACTTTAAGAGATCTAGAAATTGCCACAGGTTATTTTGCAAAGGAAAACGTACTTGGTGAAGGTGGTTATGGAATTGTCTACAAGGGTCAGCTTGCAAATGGAACTATAGTTGCAGTTAAGAACCTATTTAACAATTTAGGCCAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAGGCCATCGGCCGTGTCCGACATAAAAATCTTGTACGGTTGCTTGGCTATTGTGTAGAAGGAACTCACAGGATATTGGTATATGAGTACGTTAATAATGGCAATTTGGAGCAATGGCTTCACGGAGCTATGAGGCAATGGGGCTTTCTGACTTGGGAGGCCCGTATGAAAATTATCTTTGGGACTGCAAAAGCATTGGCATATTTGCATGAGGCGCTAGAACCAAAGGTTGTTCACAGGGATATTAAATCAAGCAACATCTTGATAGATCATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTAGCAAAGCTTCTTGGTTCAGGAAAGAGCCATGTTACAACGAGAGTAATGGGTACATTTGGATATGTTGCTCCAGAGTATGCAAATACAGGGATGTTGAATGAAAGAAGTGATGTCTACAGTTTTGGGGTCCTCCTCCTAGAGGCTATCACTGGACGAGAGCCAGTTGACTATGGTAGACCTGCAGGAGAGGTGAACCTTGTTGATTGGTTAAAGATGATGGTAGGGAACAGACGTTCTGAAGAAGTTCTAGATCCAAATATGGAAGTAAAACCATCTACACGAGCTCTCAAGAAGGCACTTTTGGTGGCGCTAAGATGTGTTGATCCGGATGCAGAAAAGAGGCCAAAGATGGGCCAGGTTGTGCACATGCATGAAGCAGATGAATTGCCATTGCGTGAGAATCGAAGAGTCAGAGCATACCGGGCTACACACATAGAAGCTGGGACTCAAGATAGAACTTACCGATTTCCAAAAGGCAGCCCTGGTTCCAGAGCTGGAGGTTCAAAAGCACAGCAATGATTTGTGGACAACACAGATGATTGAGGTTCAAACAAAAATGGTCAGAAAATATAAATGATTTCAGGCATGGTATCATGCTTGGTTTCCAGGATTTTATCTTTTCAATTGAATTCTGTTAAAATCTTTAGAACTCTTCAAGAAGCAAGACGATTGATAGCTATTAGCCAATGTTTCTTGCATTCTTATACTTTTCACATGAGAAGTAGCCACTACTTATAGAATACTATAAAGATACGATGATATTTCGACCCAAACTGGACGGTTTATTGGTCTAAAGAAAGTCCACTAGAAACCATATGGTCAGCTTTTCCAAATGCTGGAATCAAGCAAAGCTTCGTGTGACATAAAGGGAAAAGGACGGGCAAGCCTTCAAGATTCCTATGATTTAGGCAAAAAGTCAGTGGGACTGGCAGATTAAGCAGGCCTTTGTGCTTACAGTTACTTGTTTGGCTGAGCATGTTATCATGAAGTGCTGGCTTTTTTATGTTTGTCTTTGAGGTATTTTGGAGTGCTTGTGCCATTTCCCAATGGCAATGTAAACAAGGGTTTTATTCTCTGCTTTGTTAACTTATAGGGTATCATAGTATGGAGACATCTTTGTTGATATTATCTCTGACAAGTTCTTAGTCACAGCACATATGTTATACAGCTATAGCTTTGAACCTCTATGCTCATAAAGATGGTACAAAGGTTTTGGTCATGTTGTATTTTGTGTACCTCTAGGAGACCAGGTGTAGAAGAACGCAGTTGGTCCAGTTTCAAACTTGACGTTATAATAATTATTTTTATTTTTCTTCTGCC

Ace file of the UniGene sp_v1.1_unigene13588

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative (EC:2.7.11.25)	-	-	66%
FL-Next	sp=Probable receptor-like protein kinase At2g42960; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	protein kinase family protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	78%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	78%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	78%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	78%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	78%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	78%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	78%
Blast2go	Protein kinase-like domain	IPR011009	-	78%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	78%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	78%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SJG2

Fln msg:

Fln protein: MSSGGFLNAQLSKKTSIFGMKLWVLIGLAVGTFIFLILFMLSLWLGSRRKSRRILEKLPINQIPKVSKEIKEVKVDRKGINNPPQGDAISFTNQGNSSKKNSDKVFVPVGVKGFSDAKKSSPGGSSLQQKGGVSQSVDGGSSEAHSIYRGSSSFATNTASPMSGMPEVSYLGWGYWFTLRDLEIATGYFAKENVLGEGGYGIVYKGQLANGTIVAVKNLFNNLGQAEKEFRVEVEAIGRVRHKNLVRLLGYCVEGTHRILVYEYVNNGNLEQWLHGAMRQWGFLTWEARMKIIFGTAKALAYLHEALEPKVVHRDIKSSNILIDHEFNAKVSDFGLAKLLGSGKSHVTTRVMGTFGYVAPEYANTGMLNERSDVYSFGVLLLEAITGREPVDYGRPAGEVNLVDWLKMMVGNRRSEEVLDPNMEVKPSTRALKKALLVALRCVDPDAEKRPKMGQVVHMHEADELPLRENRRVRAYRATHIEAGTQDRTYRFPKGSPGSRAGGSKAQQ*

Protein Length: 510

Fln nts: TATCTATCTTCATTCAAGTTAGCAAACACATTTTTCATACATGCCCGCATGTTAGCAAATGTTTCAGGTGTTCCTGGCAATTAGGGCAGAATACAGAGACTTTGGGCACTATGGGATATTTTTCTCAGGGGAGTTTCTTAATTCAAGCACGGTCATTCATTTCACGACCACCCGAGTAATCCACATATCTGAGAGAGATGCAAGCTGCGCTTCTGGGGAATTTAGCTGTTTACCTTGGCAATTGGCACTGATAGAACGTTCGTGTGGAACTAGACTTTAAAA_-_ATGTCGTCTGGAGGGTTCTTGAATGCTCAGTTATCCAAGAAGACATCCATTTTTGGGATGAAACTCTGGGTCCTGATTGGTTTGGCTGTTGGAACATTCATTTTCTTAATTCTCTTTATGTTATCTCTTTGGCTTGGTTCTCGGAGAAAGTCGAGGAGAATACTAGAAAAGCTGCCCATTAACCAGATCCCAAAAGTTTCAAAGGAGATAAAAGAAGTAAAGGTTGATAGAAAAGGGATTAACAATCCTCCCCAAGGTGATGCAATTAGCTTCACTAATCAGGGCAATTCCAGCAAGAAAAATTCGGACAAAGTTTTTGTGCCCGTGGGGGTAAAGGGGTTTTCTGATGCAAAGAAGAGTAGTCCAGGGGGTTCCTCTCTTCAACAGAAGGGAGGAGTCTCACAATCAGTAGACGGGGGAAGCTCAGAGGCACATTCTATTTATAGAGGCTCCTCATCTTTTGCAACGAATACAGCTTCACCGATGAGTGGTATGCCTGAAGTCTCATATCTTGGATGGGGTTATTGGTTTACTTTAAGAGATCTAGAAATTGCCACAGGTTATTTTGCAAAGGAAAACGTACTTGGTGAAGGTGGTTATGGAATTGTCTACAAGGGTCAGCTTGCAAATGGAACTATAGTTGCAGTTAAGAACCTATTTAACAATTTAGGCCAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAGGCCATCGGCCGTGTCCGACATAAAAATCTTGTACGGTTGCTTGGCTATTGTGTAGAAGGAACTCACAGGATATTGGTATATGAGTACGTTAATAATGGCAATTTGGAGCAATGGCTTCACGGAGCTATGAGGCAATGGGGCTTTCTGACTTGGGAGGCCCGTATGAAAATTATCTTTGGGACTGCAAAAGCATTGGCATATTTGCATGAGGCGCTAGAACCAAAGGTTGTTCACAGGGATATTAAATCAAGCAACATCTTGATAGATCATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTAGCAAAGCTTCTTGGTTCAGGAAAGAGCCATGTTACAACGAGAGTAATGGGTACATTTGGATATGTTGCTCCAGAGTATGCAAATACAGGGATGTTGAATGAAAGAAGTGATGTCTACAGTTTTGGGGTCCTCCTCCTAGAGGCTATCACTGGACGAGAGCCAGTTGACTATGGTAGACCTGCAGGAGAGGTGAACCTTGTTGATTGGTTAAAGATGATGGTAGGGAACAGACGTTCTGAAGAAGTTCTAGATCCAAATATGGAAGTAAAACCATCTACACGAGCTCTCAAGAAGGCACTTTTGGTGGCGCTAAGATGTGTTGATCCGGATGCAGAAAAGAGGCCAAAGATGGGCCAGGTTGTGCACATGCATGAAGCAGATGAATTGCCATTGCGTGAGAATCGAAGAGTCAGAGCATACCGGGCTACACACATAGAAGCTGGGACTCAAGATAGAACTTACCGATTTCCAAAAGGCAGCCCTGGTTCCAGAGCTGGAGGTTCAAAAGCACAGCAATGA___TTTGTGGACAACACAGATGATTGAGGTTCAAACAAAAATGGTCAGAAAATATAAATGATTTCAGGCATGGTATCATGCTTGGTTTCCAGGATTTTATCTTTTCAATTGAATTCTGTTAAAATCTTTAGAACTCTTCAAGAAGCAAGACGATTGATAGCTATTAGCCAATGTTTCTTGCATTCTTATACTTTTCACATGAGAAGTAGCCACTACTTATAGAATACTATAAAGATACGATGATATTTCGACCCAAACTGGACGGTTTATTGGTCTAAAGAAAGTCCACTAGAAACCATATGGTCAGCTTTTCCAAATGCTGGAATCAAGCAAAGCTTCGTGTGACATAAAGGGAAAAGGACGGGCAAGCCTTCAAGATTCCTATGATTTAGGCAAAAAGTCAGTGGGACTGGCAGATTAAGCAGGCCTTTGTGCTTACAGTTACTTGTTTGGCTGAGCATGTTATCATGAAGTGCTGGCTTTTTTATGTTTGTCTTTGAGGTATTTTGGAGTGCTTGTGCCATTTCCCAATGGCAATGTAAACAAGGGTTTTATTCTCTGCTTTGTTAACTTATAGGGTATCATAGTATGGAGACATCTTTGTTGATATTATCTCTGACAAGTTCTTAGTCACAGCACATATGTTATACAGCTATAGCTTTGAACCTCTATGCTCATAAAGATGGTACAAAGGTTTTGGTCATGTTGTATTTTGTGTACCTCTAGGAGACCAGGTGTAGAAGAACGCAGTTGGTCCAGTTTCAAACTTGACGTTATAATAATTATTTTTATTTTTCTTCTGCC

Fln Alignment:

sp_v1.1_unigene13588___LNAQLSKKTSIFGMK---LWVLIGLAVGTFIFLILFMLSLWLGSRRKSRRILEKLPINQIPKVSKEIKEVKVDRKGINNP-PQGDAISFTNQGNSSKKNSDKVFVPVGVKGFSDAKKSSPGGSSLXXXXXXXXXXXXXXXEAHSIYRGSSSFATN-------TASPMSGMPEVSYLGWGYWFTLRDLEIATGYFAKENVLGEGGYGIVYKGQLANGTIVAVKNLFNNLGQAEKEFRVEVEAIGRVRHKNLVRLLGYCVEGTHRILVYEYVNNGNLEQWLHGAMRQWGFLTWEARMKIIFGTAKALAYLHEALEPKVVHRDIKSSNILIDHEFNAKVSDFGLAKLLGSGKSHVTTRVMGTFGYVAPEYANTGMLNERSDVYSFGVLLLEAITGREPVDYGRPAGEVNLVDWLKMMVGNRRSEEVLDPNMEVKPSTRXXXXXXXXXXRCVDPDAEKRPKMGQVVHMHEADELPLRENRRVRAYRATHIE-AGTQDRTYRFPKGS
Q9SJG2_______________LNAEMSKKISFFGLKGLKLWVWVCLVVGVFIVMILCILSLWITFRRKSRRSSSKFPFNQIPHVSKDIR---VDRAGFQNPHPESLYIEMNDKSTGKTMMSH-----LGRTKSSDNDTLSQCSS---------VNHHERACSSHSGEEGGFGSAGRQYGGGPVTASPLVGLPEISHLGWGHWFTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESDEHPFHKERRNKRSKTAGMEIVETKDESLG-PSGS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
109		60	40		1.0
167	80			20	0.995493
169		80	20		0.995493
173		80		20	0.995493
174			80	20	0.995493
175	80		20		0.995493
177		20		80	0.995493
178	80			20	0.995493
179	80		20		0.995493
183	80			20	0.995493
462			10	90	0.90298
2547	85		14		0.999981
2600	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain