SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13584

Length: 2060 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13584
ATGCACCTGTTATTGGTTCCTTGGAAATTATTCAGGTTGATCCACTGTCCTATGATTCATCCTCAAACCACCAGAATGTCATCATGGTGAATTACGGCCGGCTGACTTGCGGCTCTGACTCATTTGGTCCAGGCTTTAGCAATGATACAGACCGTTTTGGACGTGCCTGGCAGTCTGACTATACTTTCAGCCAAAGCACTGCAATGAAACGACCTCTGTCGACCCGTAATCCCATAAAAAGCACTGATCAAGCTCATGACTATTTTCCACTTCATCTTTATCAAACTGCACTTACATTGGTCTCTATTGCACCGCTAGAGTATATGTTACCTGTGGATACTAGGTTGGATTATATGCTTTGGTTTCACTTCGCTGAGATTGATCCAACCATTAATGCTCCTGGGCAGCGAGTATTTGACATCATAATAAATGGCAAAAATATACATCGAATAGATATCTTTAAGGAAGTAGGGAGCTTCACTGCACTTCGGTGGCAATATACTGTAAGCAATTTGAATAAATCAACAATTAGCATACAGCTGAATCCAGTTTCTGGAATTCCTTTAATCAGCGGCCTTGAGAACTATGCCTTGGTACCAATGGATCTTGCGACGGATCATACAGAAGTTGTAGCTATGAGAGCTTTGAAGCAGTCCCTTCGTATTCCAGATAGAATGGGATGGAACGGAGATCCATGTGCTCCTTCTACATGGGATGCGTGGGAAGGAGTGACATGCTATTATAACAAAGATCGTACGGCTCTTGTTATAACTCAGCTGGATCTTGGCAGTCAAGGCTTGAAGGGTTTTATTAGTGAGCAAATAAATGTTCTCTCCCATTTGGTAAGCCTGAACTTGAGTTCGAACATTTTACAAGGAAGTATTCCTCCAGGACTGGGCCATGGATCTCTTAGGAGAGTGGATTTGTCAAACAATCAGCTAATTGGCACAATTCCAGACAGCCTAGGCTCTTGGCAGCTTCAACTAGTATTACTGAGCAGTAATAATTTGGAAGGACAAGTCCCAGAGAATTTATATTCTATTGGTGTACGTGGAGGAACTATCAATTTGTCTGGAAATCAGGGCCTTTGTGGAGTGCCATCTCTACCAGATTGTCCATACTTCTGGGAAAAGCGTGGCCTATCTGTTGGTGCTAAAATTGGGTTGGGTTTCTCTGCTGCACTGCTTGTTATAATGCTGCTCTCATTATTGTATTGGTGCTTCATACGGAGGCACAGAAATGACTATGACTTTGGTCTTGGCCTGCCACATGATCTTATCTCAAGGACCAATCGATACCAGAAACAAAAAAACAGGATGGTTTTTGACTCTGATGATCAGAACATGAACTCTTTTCCAACCCCACATGGGTTTGCATCAAATTTGAATCCACTGTAGGATTCCCATCTGTTTCTTTGGCAAGCATTTGAAACAAACTTCTGAGCTGCTCCAACTGGGATAGATCTCATTATTTAGAGCACTTGCTTAATATGATAAGAAAACATTTTTACAGCAAGCCAATATTATTGTAATTCATTTTACCTCAACAAATAATGTAGGTGATAATTTGTATGATGAAGCCAAGGTTGAAGGGATGTTTCATAGGAAGGAATAAAAGGGGCAATATTTTTTCACTGGGGCCTTCAAGTTTGTAGAAAAATCCCATAATAGAGGGATTCAAAATTTGCTTCCCAAATGATGAATTGATAGACTTCCAGCTTAGAAGATTGAATATTGCAATGTGTATAATATAAAAGGCTTGAGGTTATTGATGATTAAGAAGATGAATTCCCTTCTATTTGGAGAGATAGAGCTTCAAAAGTTTCCAACTTGCCAAGGTGATGATGCCAAACTCTCTTTTAGCATAGCTATTAGCATTATTTGAACCAGTTGTAAATGACCAAAACTATAGCTGCAAGTTAACCATCAATGATTTTAATCTTACTATACTGATGCTTGATTATAAAGCATGATACAATGCATTTATCAGAATAAAAATTGCAGCTGGAGAGATTGCAATACAGAGATCAAGTCAATAAACTAATCTGCACTTATAAATTC

Ace file of the UniGene sp_v1.1_unigene13584

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to leucine-rich repeat protein-related	-	-	52%
FL-Next	sp=Probable LRR receptor-like serine/threonine-protein kinase At1g05700; Arabidopsis thaliana (Mouse-ear cress).	-	-	29%
Blast2go	serine-threonine protein plant-	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	69%
Blast2go	Malectin	IPR021720	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: C0LGD6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 232 aas, putative chimeric sequence, your sequence is shorter than subject: 465 - 852

Fln protein: APVIGSLEIIQVDPLSYDSSSNHQNVIMVNYGRLTCGSDSFGPGFSNDTDRFGRAWQSDYTFSQSTAMKRPLSTRNPIKSTDQAHDYFPLHLYQTALTLVSIAPLEYMLPVDTRLDYMLWFHFAEIDPTINAPGQRVFDIIINGKNIHRIDIFKEVGSFTALRWQYTVSNLNKSTISIQLNPVSGIPLISGLENYALVPMDLATDHTEVVAMRALKQSLRIPDRMGWNGDPCAPSTWDAWEGVTCYYNKDRTALVITQLDLGSQGLKGFISEQINVLSHLVSLNLSSNILQGSIPPGLGHGSLRRVDLSNNQLIGTIPDSLGSWQLQLVLLSSNNLEGQVPENLYSIGVRGGTINLSGNQGLCGVPSLPDCPYFWEKRGLSVGAKIGLGFSAALLVIMLLSLLYWCFIRRHRNDYDFGLGLPHDLISRTNRYQKQKNRMVFDSDDQNMNSFPTPHGFASNLNPL*

Protein Length: 466

Fln nts: ATGCACCTGTTATTGGTTCCTTGGAAATTATTCAGGTTGATCCACTGTCCTATGATTCATCCTCAAACCACCAGAATGTCATCATGGTGAATTACGGCCGGCTGACTTGCGGCTCTGACTCATTTGGTCCAGGCTTTAGCAATGATACAGACCGTTTTGGACGTGCCTGGCAGTCTGACTATACTTTCAGCCAAAGCACTGCAATGAAACGACCTCTGTCGACCCGTAATCCCATAAAAAGCACTGATCAAGCTCATGACTATTTTCCACTTCATCTTTATCAAACTGCACTTACATTGGTCTCTATTGCACCGCTAGAGTATATGTTACCTGTGGATACTAGGTTGGATTATATGCTTTGGTTTCACTTCGCTGAGATTGATCCAACCATTAATGCTCCTGGGCAGCGAGTATTTGACATCATAATAAATGGCAAAAATATACATCGAATAGATATCTTTAAGGAAGTAGGGAGCTTCACTGCACTTCGGTGGCAATATACTGTAAGCAATTTGAATAAATCAACAATTAGCATACAGCTGAATCCAGTTTCTGGAATTCCTTTAATCAGCGGCCTTGAGAACTATGCCTTGGTACCAATGGATCTTGCGACGGATCATACAGAAGTTGTAGCTATGAGAGCTTTGAAGCAGTCCCTTCGTATTCCAGATAGAATGGGATGGAACGGAGATCCATGTGCTCCTTCTACATGGGATGCGTGGGAAGGAGTGACATGCTATTATAACAAAGATCGTACGGCTCTTGTTATAACTCAGCTGGATCTTGGCAGTCAAGGCTTGAAGGGTTTTATTAGTGAGCAAATAAATGTTCTCTCCCATTTGGTAAGCCTGAACTTGAGTTCGAACATTTTACAAGGAAGTATTCCTCCAGGACTGGGCCATGGATCTCTTAGGAGAGTGGATTTGTCAAACAATCAGCTAATTGGCACAATTCCAGACAGCCTAGGCTCTTGGCAGCTTCAACTAGTATTACTGAGCAGTAATAATTTGGAAGGACAAGTCCCAGAGAATTTATATTCTATTGGTGTACGTGGAGGAACTATCAATTTGTCTGGAAATCAGGGCCTTTGTGGAGTGCCATCTCTACCAGATTGTCCATACTTCTGGGAAAAGCGTGGCCTATCTGTTGGTGCTAAAATTGGGTTGGGTTTCTCTGCTGCACTGCTTGTTATAATGCTGCTCTCATTATTGTATTGGTGCTTCATACGGAGGCACAGAAATGACTATGACTTTGGTCTTGGCCTGCCACATGATCTTATCTCAAGGACCAATCGATACCAGAAACAAAAAAACAGGATGGTTTTTGACTCTGATGATCAGAACATGAACTCTTTTCCAACCCCACATGGGTTTGCATCAAATTTGAATCCACTGTAG___GATTCCCATCTGTTTCTTTGGCAAGCATTTGAAACAAACTTCTGAGCTGCTCCAACTGGGATAGATCTCATTATTTAGAGCACTTGCTTAATATGATAAGAAAACATTTTTACAGCAAGCCAATATTATTGTAATTCATTTTACCTCAACAAATAATGTAGGTGATAATTTGTATGATGAAGCCAAGGTTGAAGGGATGTTTCATAGGAAGGAATAAAAGGGGCAATATTTTTTCACTGGGGCCTTCAAGTTTGTAGAAAAATCCCATAATAGAGGGATTCAAAATTTGCTTCCCAAATGATGAATTGATAGACTTCCAGCTTAGAAGATTGAATATTGCAATGTGTATAATATAAAAGGCTTGAGGTTATTGATGATTAAGAAGATGAATTCCCTTCTATTTGGAGAGATAGAGCTTCAAAAGTTTCCAACTTGCCAAGGTGATGATGCCAAACTCTCTTTTAGCATAGCTATTAGCATTATTTGAACCAGTTGTAAATGACCAAAACTATAGCTGCAAGTTAACCATCAATGATTTTAATCTTACTATACTGATGCTTGATTATAAAGCATGATACAATGCATTTATCAGAATAAAAATTGCAGCTGGAGAGATTGCAATACAGAGATCAAGTCAATAAACTAATCTGCACTTATAAATTC

Fln Alignment:

sp_v1.1_unigene13584___PVIGSLEI--IQVDPLSYDSSSNHQNVIMVNYGRLTCGSDSFGPGFSNDTDRFGRAWQSDYTFSQSTAMKRPLSTRNPIKSTDQAHDYFPLHLYQTALTLVSIA-PLEYMLP-VDTRLDYMLWFHFAEIDPTINAPGQ-RVFDIIINGKNIHRIDIFKEVGSFTALRWQYTVSNLN-----KSTISIQLNPVSGIP-LISGLENYALVPMDLA-TDHTEVVAMRALKQSLRIPDRMGWNGDPCAPSTWDAWEGVTCYYNKDRTALVITQLDLGSQGLKGFISEQXXXXXXXXXXXXXXXXXQGSIPPGLGH-GSLRRVDLSNNQLIGTIP
C0LGD6_______________PFISTLELRFLGNDNTTYDSPNG-----ALFFSRRWDLRSLMGSPVRYDDDVYDRIW-----IPRNFGYCREINTSLPVTSDNNSYSLSSL-VMSTAMTPINTTRPITMTLENSDPNVRYFVYMHFAEVEDLSLKPNQTREFDISINGVTV--------AAGFSPKYLQTNTFFLNPESQSKIAFSLVRTPKSTLPPIVNALEIYVANSFSQSLTNQEDGDAVTSLKTSYKV--KKNWHGDPCLPNDY-IWEGLNCSYD-SLTPPRITSLNLSSSGLTGHISSSFSNLTMIQELDLSNNGLTGDIPEFLSKLKFLRVLNLENNTLTGSVP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1076			83	16	0.994512
1187			12	87	0.992554
1191			12	87	0.992554
1193		12		87	0.992554
1194	87	12			0.992554
1195	87			12	0.992554
1200			85	14	0.993533
1202	14			85	0.993533
1274	90		10		0.90298
1275			10	90	0.90298
1426	20		80		0.999996
1481	87	12			0.992554
1482	12	87			0.992554
1495	14	71		14	0.984337
1634		83	16		0.994512
1635	83		16		0.994512
1636		83	16		0.994512
1710	80			20	0.995493
1811	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain