SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13580

Length: 2691 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13580
TCTTTAACTCGTCGTGACCTTGGCTGTCACTCAAGTCTTAAAAAAGGGTCTTTTCCATTGGGATATGATCCAGGTTCGAAAATTCGCAAGGGATGCCAATAGGAGGGTTTGACTTGTATGCAAGATGAACACGTGGTGATTTTGGGCCGAGATTTTGTTATTTTCATAAAGGTTTTGTTTGTGAGGAATCCGTGAGACAAATTTCCTGCATAGGAAAGTTCACCATTCGCGGATGTTGTTGCCTCGGTCTAGGGGATGCTTGCGACGACAAGACACAGTAATTGAATTTGTTGCTTGCTTAGAAGTCTAACACATTTGACAAATACTTCAAATAAAGCATAGAAGCTTTGAGAAGCGGAGCACATCCGCAACTTCGCGCTCACGCATGTCTTTAAAGGCATCGAACAACTTCCATGGCTGCTGGTTCCACAGACGGAGATTCTGAAAGCTTTAGTGACAGGCGTCCTTTACTCATGGAGCATATGTCTAGTTTATCAGGTCAAGAGCATTTTGTTATAGATGTAAATTCAGGTAGCTCCGCGGTTTCATTGGCTCCTCAAGGTGAAGTGGCAACTGCCGTGGATGCACAGGAAGTGGTATCATCGACAAGCAGACAAGCAACATCTCGACTGCCTCCTCCATCTTCGTCATTGAGAAGCAGCTCCTTTTCCAGACCTGCTGACTTACGAAACTATGGCCGCCAGCAACGAGCTAGCCCATTGAATTCAGGACTTTGGATTTCAATTGAACTTACCTTAACAGTTAGTCAGATATTAGCTTCCATTATTGTTTTATCACTCTCAAGAAATGAGAATCCTCGGGCTCCATTATTTGTTTGGGTCGTGGGTTATGCTACAGGGTGTCTTGCCACACTTCCTCTTTTGTATTGGCGATACACACACCGATATATTCATGTGCCGGAGCAAGATCCTGTATCTTCATCCATTGCTTCCCATTCTAGTCCTCCTCCTCCTCAAACTACCTCTTACACTGCAATGTCAGTTCCTCAAGATTCACGAGAGGAAGAAGGCCCAAGTACATCTCAGGCTTCAAGGAGCCGTCAGCATACGGCAGGAAGGAATCCCAGGCTTAATGTATATGTAGAACGGTTCAAATTGGCTTTAGACTGCTTCTTTGCTGTTTGGTTTGTTGTTGGGAACGTGTGGATATTTGGTGGTCACTCATCCTCAAGTGATGCTCCAAATCTTTACAGGTTGTGTATTGTGTTTCTCACATTTAGTTGTATAGGTTATGCCATGCCATTCATTTTGTGTGCGACAGTATGTTGCTGCCTACCCTGTATAATACATATTCTTGGATTTCGAGAGGACCAGAGTCAGACAAGAGGAGCTTCACCTGAAGTGATTAATACTTTGCCAACTTACAAGTTCAAAGCAAAAAGTACAACCGAAAGTAATGGAAATAAAGATGACAGTGAAGTTGACTCAGAAAGCGCAGGTGAGGGTGGCTTTATAGCAGCTGGAACTGATAAAGAGAGACTTATTTCAGGCGAAGATGCGATTTGTTCCATTTGCTTGGGCAAATACCAGGACAATGATGAGCTAAGGGAGTTATCATGCACACATTGCTTCCATGTAGAATGTGTTGATAAATGGTTGAAAATAAATGCATCTTGTCCTCTTTGCAAACATGAAATTGGGGAATCCAGTGAAATAGCACCAGAATCTTCTGCACAAGCAGGACAGCGAAGAGATGGACAATTGGTGTGATGAGCCAGTATGAATCAGGCATGAGTTGGTGCTGCACTGCATAGATGAACCATAGTGAGGAAAGGAGCAGCATAACCCTCAATATTGCTGTTTTCTAGTTGTAGACAATGCATCTCTTGCCATAAAAGAGAGCAACCTGATGGTGCATGACCGTTACAGCTAGGGAAGACTTTAAAAGTTTGTAAAACTAAGCATAGCTCTTAAACACTGAAGTTAAAAGACATGATTGGAATGTGCAAGTGGTTCAGTATCCAAATATTGAAGGTTGCAGAATATGGAGCTACTATGCAAACGAGTAACTTTATCTATATTTTCACAAGATCATACAATGGGAAACGTTGAGATAACAACTGCATCGGTGAACCAGAATAGTATAAAAGTTCTTGCAACTAAAGGGATGAATAATTGCATGGTGTGAATTAAGAATGACCATGTAGAGCTGCTATACAGACTTCTCCAAGGTTTTATATTTGAGGAGTGCGCCTATTGATGTTGTGCAAAAATTTCAGAAATTAAGTTCTGCGGCATTTATCAAGGTTGTTTGAGCCATTTAAATAGCAAGTTTTTGTTTCTCGTGTCACAAGTACTTTCAGGAAAGCAGGTTAGACGATAAAATGCATCTTCCCAATTTACTGTATTTCTTGTTTCATAAGATTCTCTCAATGTCCTTAGCACGTGGCTTTCATTATTGGAACCAATGTATGATGTGTAGCAGAGGCAATGACTCTATGGAATCTCTCACCAAACACTGTTTTGGCTTGTAGATAGCTCTAGTTATAATGCTGCAGTGACAAACACATCTAGTTGGGGCAGTGAATGACGCTTTTGTCATTCTCTTTTGGTTTCAGGCACGGTCATTAAGTCTCTTTGGATTCATAAACTTTCCAATTGTGATTCATTAGGCTTCTTTTGTTTATATCTGGCACTCACGTTGGATCGATTCCATATTGTATTCGATTCT

Ace file of the UniGene sp_v1.1_unigene13580

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RS95_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	ring finger	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	67%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	67%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	67%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSJ7

Fln msg: your sequence is longer than subject: 439 - 397

Fln protein: MAAGSTDGDSESFSDRRPLLMEHMSSLSGQEHFVIDVNSGSSAVSLAPQGEVATAVDAQEVVSSTSRQATSRLPPPSSSLRSSSFSRPADLRNYGRQQRASPLNSGLWISIELTLTVSQILASIIVLSLSRNENPRAPLFVWVVGYATGCLATLPLLYWRYTHRYIHVPEQDPVSSSIASHSSPPPPQTTSYTAMSVPQDSREEEGPSTSQASRSRQHTAGRNPRLNVYVERFKLALDCFFAVWFVVGNVWIFGGHSSSSDAPNLYRLCIVFLTFSCIGYAMPFILCATVCCCLPCIIHILGFREDQSQTRGASPEVINTLPTYKFKAKSTTESNGNKDDSEVDSESAGEGGFIAAGTDKERLISGEDAICSICLGKYQDNDELRELSCTHCFHVECVDKWLKINASCPLCKHEIGESSEIAPESSAQAGQRRDGQLV*

Protein Length: 440

Fln nts: TCTTTAACTCGTCGTGACCTTGGCTGTCACTCAAGTCTTAAAAAAGGGTCTTTTCCATTGGGATATGATCCAGGTTCGAAAATTCGCAAGGGATGCCAATAGGAGGGTTTGACTTGTATGCAAGATGAACACGTGGTGATTTTGGGCCGAGATTTTGTTATTTTCATAAAGGTTTTGTTTGTGAGGAATCCGTGAGACAAATTTCCTGCATAGGAAAGTTCACCATTCGCGGATGTTGTTGCCTCGGTCTAGGGGATGCTTGCGACGACAAGACACAGTAATTGAATTTGTTGCTTGCTTAGAAGTCTAACACATTTGACAAATACTTCAAATAAAGCATAGAAGCTTTGAGAAGCGGAGCACATCCGCAACTTCGCGCTCACGCATGTCTTTAAAGGCATCGAACAACTTCC_-_ATGGCTGCTGGTTCCACAGACGGAGATTCTGAAAGCTTTAGTGACAGGCGTCCTTTACTCATGGAGCATATGTCTAGTTTATCAGGTCAAGAGCATTTTGTTATAGATGTAAATTCAGGTAGCTCCGCGGTTTCATTGGCTCCTCAAGGTGAAGTGGCAACTGCCGTGGATGCACAGGAAGTGGTATCATCGACAAGCAGACAAGCAACATCTCGACTGCCTCCTCCATCTTCGTCATTGAGAAGCAGCTCCTTTTCCAGACCTGCTGACTTACGAAACTATGGCCGCCAGCAACGAGCTAGCCCATTGAATTCAGGACTTTGGATTTCAATTGAACTTACCTTAACAGTTAGTCAGATATTAGCTTCCATTATTGTTTTATCACTCTCAAGAAATGAGAATCCTCGGGCTCCATTATTTGTTTGGGTCGTGGGTTATGCTACAGGGTGTCTTGCCACACTTCCTCTTTTGTATTGGCGATACACACACCGATATATTCATGTGCCGGAGCAAGATCCTGTATCTTCATCCATTGCTTCCCATTCTAGTCCTCCTCCTCCTCAAACTACCTCTTACACTGCAATGTCAGTTCCTCAAGATTCACGAGAGGAAGAAGGCCCAAGTACATCTCAGGCTTCAAGGAGCCGTCAGCATACGGCAGGAAGGAATCCCAGGCTTAATGTATATGTAGAACGGTTCAAATTGGCTTTAGACTGCTTCTTTGCTGTTTGGTTTGTTGTTGGGAACGTGTGGATATTTGGTGGTCACTCATCCTCAAGTGATGCTCCAAATCTTTACAGGTTGTGTATTGTGTTTCTCACATTTAGTTGTATAGGTTATGCCATGCCATTCATTTTGTGTGCGACAGTATGTTGCTGCCTACCCTGTATAATACATATTCTTGGATTTCGAGAGGACCAGAGTCAGACAAGAGGAGCTTCACCTGAAGTGATTAATACTTTGCCAACTTACAAGTTCAAAGCAAAAAGTACAACCGAAAGTAATGGAAATAAAGATGACAGTGAAGTTGACTCAGAAAGCGCAGGTGAGGGTGGCTTTATAGCAGCTGGAACTGATAAAGAGAGACTTATTTCAGGCGAAGATGCGATTTGTTCCATTTGCTTGGGCAAATACCAGGACAATGATGAGCTAAGGGAGTTATCATGCACACATTGCTTCCATGTAGAATGTGTTGATAAATGGTTGAAAATAAATGCATCTTGTCCTCTTTGCAAACATGAAATTGGGGAATCCAGTGAAATAGCACCAGAATCTTCTGCACAAGCAGGACAGCGAAGAGATGGACAATTGGTGTGA___TGAGCCAGTATGAATCAGGCATGAGTTGGTGCTGCACTGCATAGATGAACCATAGTGAGGAAAGGAGCAGCATAACCCTCAATATTGCTGTTTTCTAGTTGTAGACAATGCATCTCTTGCCATAAAAGAGAGCAACCTGATGGTGCATGACCGTTACAGCTAGGGAAGACTTTAAAAGTTTGTAAAACTAAGCATAGCTCTTAAACACTGAAGTTAAAAGACATGATTGGAATGTGCAAGTGGTTCAGTATCCAAATATTGAAGGTTGCAGAATATGGAGCTACTATGCAAACGAGTAACTTTATCTATATTTTCACAAGATCATACAATGGGAAACGTTGAGATAACAACTGCATCGGTGAACCAGAATAGTATAAAAGTTCTTGCAACTAAAGGGATGAATAATTGCATGGTGTGAATTAAGAATGACCATGTAGAGCTGCTATACAGACTTCTCCAAGGTTTTATATTTGAGGAGTGCGCCTATTGATGTTGTGCAAAAATTTCAGAAATTAAGTTCTGCGGCATTTATCAAGGTTGTTTGAGCCATTTAAATAGCAAGTTTTTGTTTCTCGTGTCACAAGTACTTTCAGGAAAGCAGGTTAGACGATAAAATGCATCTTCCCAATTTACTGTATTTCTTGTTTCATAAGATTCTCTCAATGTCCTTAGCACGTGGCTTTCATTATTGGAACCAATGTATGATGTGTAGCAGAGGCAATGACTCTATGGAATCTCTCACCAAACACTGTTTTGGCTTGTAGATAGCTCTAGTTATAATGCTGCAGTGACAAACACATCTAGTTGGGGCAGTGAATGACGCTTTTGTCATTCTCTTTTGGTTTCAGGCACGGTCATTAAGTCTCTTTGGATTCATAAACTTTCCAATTGTGATTCATTAGGCTTCTTTTGTTTATATCTGGCACTCACGTTGGATCGATTCCATATTGTATTCGATTCT

Fln Alignment:

sp_v1.1_unigene13580___ISIELTLTVSQILASIIVLSLSRNENPRAPLFVWVVGYATGCLATLPLLYWRYTHRYIHVPEQDXXXXXXXXXXXXXXXXXXXXXAMSVPQDSREEEGPSTSQASR--SRQHTAGRNPRLNVYVERFKLALDCFFAVWFVVGNVWIF-GGHSSSSDAPNLYRLCIVFLTFS------CIGYAMPFILCATVCCCLPCIIHILGFREDQSQTRGASPEVINTLPTYKFKAKSTTESNGNKDDSEVDSESAGEGGFIAAGTDKERLISGEDAICSICLGKYQDNDELRELSCTHCFHVECVDKWLKINASCPLCKHEIGESSEIAPE
C0PSJ7_______________VVLDIIWNLAFVVVATVVLVLSRHENPNMPVRVWVVGYALQCLLHMICVCFEYRRRHSNAQQQRSNSGGQSGHTNNNNNSAN----QQSPGEQQESDDATDEEVDEVLSTERTS--------IAKRLESANTMFSFIWWIVGFYWISAGGQILTHDAPQLYWLCVVFLAFDVFFVVFCV--ALACVIGIAVCCCLPCIIAILYAVADQE---GASEEDIGLLPKYKFKSIGGSE----KISGEKSGPFGGIMNLCTGESSTERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNARE

SNPs (tot: 107)

Position	A %	C %	G %	T %	Probability
10	33	66			0.997452
16			66	33	0.997452
18		66		33	0.997452
19		66		33	0.997452
22			66	33	0.997452
23		33	66		0.997452
24		66		33	0.997452
29		66		33	0.997452
32			33	66	0.997452
147		20	80		0.995493
149		80		20	0.995493
152	80			20	0.995493
156		20		80	0.995493
159			20	80	0.995493
161		20		80	0.995493
163	80		20		0.995493
166	20			80	0.995493
167		20		80	0.995493
203	25	75			0.996473
248		75		25	0.996473
363			80	20	0.995493
364	80	20			0.995493
366		80	20		0.995493
369	80	20			0.995493
371		80		20	0.995493
372		60	40		1.0
375	20			80	0.995493
376	60	20	20		0.99255
378		20		80	0.995493
379	20			80	0.995493
380		80	20		0.995493
381			20	80	0.995493
382		40	60		1.0
383	20		60	20	0.99255
386		20		80	0.995493
389			80	20	0.995493
756			11	88	0.923564
761			11	88	0.923564
763	88		11		0.923564
766	88	11			0.923564
770	87		12		0.992554
774	87			12	0.992554
776	87			12	0.992554
777		12		87	0.992554
779		12		87	0.992554
781	87	12			0.992554
782	12		87		0.992554
986	10			90	0.90298
1096		25		37	1.0
1103	16			83	0.994512
1860	75		25		0.996473
1890		75		25	0.996473
1961	85		14		0.993533
1970	83	16			0.994512
1977	83			16	0.994512
1978		16	83		0.994512
1979	16			83	0.994512
2014		14		85	0.993533
2016			85	14	0.993533
2017	85	14			0.993533
2019		85		14	0.993533
2020			14	85	0.993533
2023		14		85	0.993533
2024	71		14	14	0.984337
2027	14		14		0.984337
2029	85			14	0.993533
2030	85		14		0.993533
2031	85			14	0.993533
2035		14	85		0.993533
2072	16		83		0.994512
2186	87		12		0.992554
2187		87	12		0.992554
2200		14	85		0.993533
2203			14	85	0.993533
2205			14	85	0.993533
2207		14		85	0.993533
2208	85	14			0.993533
2211			14	85	0.993533
2213	85			14	0.993533
2215		14	85		0.993533
2217		14	85		0.993533
2219		14	85		0.993533
2220	14	85			0.993533
2250	66	33			1.0
2251	66		33		1.0
2253		33		66	1.0
2254	66		33		1.0
2255	66			33	1.0
2257	33			66	1.0
2258		33		66	1.0
2262		66		33	1.0
2266	66			33	1.0
2267			33	66	1.0
2269		33		66	1.0
2290			12	87	0.999964
2344	85	15			1.0
2346	85			15	1.0
2349	85			15	1.0
2350			15	85	1.0
2352	85	15			1.0
2353	81	15		3	1.0
2354	81		6	12	1.0
2357		93		6	0.999153
2358	87		12		1.0
2361	3	3		87	0.992016
2362	6	3		90	0.997073
2364	3	87	3	6	0.992016

SSRs (tot: 1)

Start position	End position	Sequence	Length
962	975	TCC TCC TCC TCC TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain