SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13559

Length: 741 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13559

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Populus trichocarpa RepID=B9IHB0_POPTR	-	-	73%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	pectinesterase family protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	82%
Blast2go	Starch and sucrose metabolism	00500	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	82%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	82%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	82%
Blast2go	endomembrane system	GO:0012505	Cellular Component	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	Pectinesterase, catalytic	IPR000070	-	82%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	82%
Blast2go	Pectin lyase fold	IPR012334	-	82%
Blast2go	Pectinesterase, active site	IPR018040	-	82%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
212		66	33	0.997452
214	66	33		0.997452
215	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain