SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13549

Length: 903 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13549

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9S2N7_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	rab family gtpase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sphingolipid metabolism	00600		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	81%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	81%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	81%
Blast2go	protein transport	GO:0015031	Biological Process	81%
Blast2go	metal ion binding	GO:0046872	Molecular Function	81%
Blast2go	sphingomyelin phosphodiesterase activity	GO:0004767	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	81%
Blast2go	transcription factor binding	GO:0008134	Molecular Function	81%
Blast2go	GTP binding	GO:0005525	Molecular Function	81%
Blast2go	intracellular	GO:0005622	Cellular Component	81%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	81%
Blast2go	Ran GTPase	IPR002041	-	81%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	81%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	81%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	81%
Blast2go	Small GTP-binding protein domain	IPR005225	-	81%
Blast2go	Ras	IPR013753	-	81%
Blast2go	Small GTPase	IPR020851	-	81%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
58	25			75	0.996473
60	75		25		0.996473
61		75	25		0.996473
62	75		25		0.996473
124			50	50	1.0
174		75		25	0.996473
243	80		20		0.995493
255	83		16		0.994512
256			16	83	0.994512
272	14		85		0.993533
364	10		90		0.90298
501	80			20	1.0
659	88		11		0.923564
661		11		88	0.923564
671		87	12		0.992554
672		87	12		0.992554
673	12			87	0.992554
676		16		83	0.994512
677	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain