SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13529

Length: 352 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13529
CAATCCACTTGAGGAAGTTGTAAATCAGGTTGTGATGGTTGTAGTTAACAAGGTAGATGTTTGTGTCATGGATGCACGTCGGTCTCCCCTTGAAAGCCAAGTCGCCCCTGAATGGGGTTATGAAAAGGATAAATTATCAACAGGAAGACACCGGTTGTACTGGCAGGCATCTATTCCAGCCATGGGTCTGCAGACATATTACATTGCTAATGGTTTGGCTGATTGTGAGAAAGCTAAGCTAACAGATTTGAAGGTTTCTCATGGATTGCAATCATTCACTTGCCCTGCTCCATATAAATGCTCAAAATTGGAAGGTGATAATGCTGAGATAAAAAACAAGCATCAGACACTT

Ace file of the UniGene sp_v1.1_unigene13529

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%
Blast2go	golgi alpha-mannosidase ii	-	-	2.31787e-26	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	2.31787e-26	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		2.31787e-26	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	2.31787e-26	69%
Blast2go	binding	GO:0005488	Molecular Function	2.31787e-26	69%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	2.31787e-26	69%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	2.31787e-26	69%
Blast2go	plastid	GO:0009536	Cellular Component	2.31787e-26	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase-type carbohydrate-binding	IPR011013	-	2.31787e-26	69%
Blast2go	Glycosyl hydrolases 38, C-terminal	IPR011682	-	2.31787e-26	69%
Blast2go	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	2.31787e-26	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HV68

Fln msg: Distance to subject end: 400 aas, your sequence is shorter than subject: 117 - 1149

Fln protein: NPLEEVVNQVVMVVVNKVDVCVMDARRSPLESQVAPEWGYEKDKLSTGRHRLYWQASIPAMGLQTYYIANGLADCEKAKLTDLKVSHGLQSFTCPAPYKCSKLEGDNAEIKNKHQTL

Protein Length: 118

Fln nts: CAATCCACTTGAGGAAGTTGTAAATCAGGTTGTGATGGTTGTAGTTAACAAGGTAGATGTTTGTGTCATGGATGCACGTCGGTCTCCCCTTGAAAGCCAAGTCGCCCCTGAATGGGGTTATGAAAAGGATAAATTATCAACAGGAAGACACCGGTTGTACTGGCAGGCATCTATTCCAGCCATGGGTCTGCAGACATATTACATTGCTAATGGTTTGGCTGATTGTGAGAAAGCTAAGCTAACAGATTTGAAGGTTTCTCATGGATTGCAATCATTCACTTGCCCTGCTCCATATAAATGCTCAAAATTGGAAGGTGATAATGCTGAGATAAAAAACAAGCATCAGACACTT

Fln Alignment:

sp_v1.1_unigene13529___NPLEEXXXXXXXXXXXXXXXXXXXARRSPLESQVAPEWGYEKDKLSTGRHRLYWQASIPAMGLQTYYIANGLADCEKAKLTDLKVSHGLQSFTCPAPYKCSKLEGDNAEIKNKHQTL
F6HV68_______________NPLEQTRNEVVMVVVNRPDVTVLASNWTCVKSQVSPEWQHDKSKIFTGRHRVHWKASVPAMGLETYYIAVGYVGCEKAKQAKLKFATKSNHLPCPAPYACSKLEGDTAEIQNRHQTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain