SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13478

Length: 288 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13478
ACAACTGGCTAGACGAATTGGGTTGCAGTTAGAGGATGCAGAATTGAATGACCTCCTTATTCCTTCCCTGTCTTATGCCAGTGAGACTCTTTATGATGTGGACCTTGTGCAGACAATATTGGAGTATTTCATGAGAGAGAGCATGAGTCCTCCCACCAGCCCTGTCCGGTCAAAGCATACGAACATGAAGCGTAGATCAAGGTCATCTGAATTTGTTAATTTTGTGGAGAAGAGAATATCTTCTGCAACCTACAACTCAAAGCTAAAAGTTGCAAAACTGGTTGATAC

Ace file of the UniGene sp_v1.1_unigene13478

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Signal transducer, putative n=1 Tax=Ricinus communis RepID=B9SVL5_RICCO	-	-	2.0e-23	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	phototropic-responsive nph3 family protein	-	-	3.15272e-23	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	3.15272e-23	74%
Blast2go	protein binding	GO:0005515	Molecular Function	3.15272e-23	74%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	3.15272e-23	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NPH3	IPR004249	-	3.15272e-23	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 225 aas, your sequence is shorter than subject: 95 - 648

Fln protein: QLARRIGLQLEDAELNDLLIPSLSYASETLYDVDLVQTILEYFMRESMSPPTSPVRSKHTNMKRRSRSSEFVNFVEKRISSATYNSKLKVAKLVD

Protein Length: 96

Fln nts: ACAACTGGCTAGACGAATTGGGTTGCAGTTAGAGGATGCAGAATTGAATGACCTCCTTATTCCTTCCCTGTCTTATGCCAGTGAGACTCTTTATGATGTGGACCTTGTGCAGACAATATTGGAGTATTTCATGAGAGAGAGCATGAGTCCTCCCACCAGCCCTGTCCGGTCAAAGCATACGAACATGAAGCGTAGATCAAGGTCATCTGAATTTGTTAATTTTGTGGAGAAGAGAATATCTTCTGCAACCTACAACTCAAAGCTAAAAGTTGCAAAACTGGTTGATAC

Fln Alignment:

sp_v1.1_unigene13478___LARRIGLQLEDAELNDLLIPSLSYASETLYDVDLVQTILEYFM
B8LPD8_______________LERRIGLQLEHATLDDLLIPSYSYTVETLYDIDCVQRILQHFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain