SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13471

Length: 514 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13471
TGGCAAAGCAGAGTATCGATAGACATAAAATATCCTTGGGAGTCTTCCTCATTGCCAAACTACCGATATTGATAGCAACGTTGATAGGACAACAGGCACTGTCAAGATATTTATACAATACTCTAGCCAATACAACAATGATGTTATCAAACATGATCGGCCCAATGGAGAAGGTAGCAATTTATGGGAATCCAATAAAAAGCTTTTCGTTCTTTGTAACCGGCTTGCCACAATCGCTGGGAGTTTTTATTGTGAGCTATATGGATTCTGTCCTGGTGCAAGTTCATGCTCACGAGGATTATGTGAACGCTGATATCCTCGTCAAGTGTTTCATGGAAGCCATGGAAGAAATGAAGAAATCCCAGTTTCATTACGTCATAGAGACATGAGGGCTTATGCCACCTTTGTAATCTTTTGAATAATGCATCTAGTCTCAAGACGTTTTAGGGTTTATGTGATCGTCAAACAGTGCTTTCCGTTAAAGATGTGATTCCTGGTGTGTAACCTCTTCGAT

Ace file of the UniGene sp_v1.1_unigene13471

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1298 domain containing protein	-	-	6.0e-19	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	2.87308e-35	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-acyltransferase, WSD1, C-terminal	IPR009721	-	2.87308e-35	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9H1

Fln msg: your sequence is shorter than subject: 129 - 504

Fln protein: AKQSIDRHKISLGVFLIAKLPILIATLIGQQALSRYLYNTLANTTMMLSNMIGPMEKVAIYGNPIKSFSFFVTGLPQSLGVFIVSYMDSVLVQVHAHEDYVNADILVKCFMEAMEEMKKSQFHYVIET*

Protein Length: 130

Fln nts: TGGCAAAGCAGAGTATCGATAGACATAAAATATCCTTGGGAGTCTTCCTCATTGCCAAACTACCGATATTGATAGCAACGTTGATAGGACAACAGGCACTGTCAAGATATTTATACAATACTCTAGCCAATACAACAATGATGTTATCAAACATGATCGGCCCAATGGAGAAGGTAGCAATTTATGGGAATCCAATAAAAAGCTTTTCGTTCTTTGTAACCGGCTTGCCACAATCGCTGGGAGTTTTTATTGTGAGCTATATGGATTCTGTCCTGGTGCAAGTTCATGCTCACGAGGATTATGTGAACGCTGATATCCTCGTCAAGTGTTTCATGGAAGCCATGGAAGAAATGAAGAAATCCCAGTTTCATTACGTCATAGAGACATGA___GGGCTTATGCCACCTTTGTAATCTTTTGAATAATGCATCTAGTCTCAAGACGTTTTAGGGTTTATGTGATCGTCAAACAGTGCTTTCCGTTAAAGATGTGATTCCTGGTGTGTAACCTCTTCGAT

Fln Alignment:

sp_v1.1_unigene13471___AKQSIDRHKISLGVFLIAKLPILIATLIGQQALSRYLYNTLANTTMMLSNMIGPMEKVAIYGNPIKSFSFFVTGLPQSLGVFIVSYMDSVLVQVHAHEDYVNADILVKCFMEAMEEMKKS
D5A9H1_______________AKSKMDRHKISLGAFVDAKIMTYLGWLKGPQAVSRYLYSTIANSTIAISNMIGPMEMVAIDGNPIKSFSFFVSGAPQSLDLFIVSYTGVVVLQVYAQKAYVDANMLSKCFMEACEEIKKA

SNPs (tot: 3)

Position	C %	G %	T %	Probability
152	80		20	0.995493
157		20	80	0.995493
158	80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain