SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13462

Length: 1578 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13462 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-1,4-fucosyltransferase n=1 Tax=Solanum lycopersicum RepID=Q8VXF9_SOLLC	-	-	67%
FL-Next	sp=Alpha-(1,4)-fucosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	alpha fucosyltransferase	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	Lewis a epitope biosynthetic process	GO:0010493	Biological Process	76%
Blast2go	protein glycosylation	GO:0006486	Biological Process	76%
Blast2go	fucosyltransferase activity	GO:0008417	Molecular Function	76%
Blast2go	Golgi cisterna membrane	GO:0032580	Cellular Component	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 10	IPR001503	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9C8W3

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: SRACITVLRRDRGCHSTLTLVGYLELPPSYSSGIPKPSDPTSHTSFIEEPFTEVLTAFRKWDAQVGCKKFREEYREIPTNVSSLQDPDGIACNSLNLNHVSILVKGWTWIPDNLNNLYSCRCGLSCLWTKSEVLVDEPEAVFFETTTPPLKRRKGEPLRVYLDLEAGRRSSSFADIFVSYHAGDDVQATYAGALFHNNRNYYVSPDKNNDILVYWSSSRCLRDRNELAGRLLSMLPHHSFGKCLNNVNGKDMALRLYPECRPNHVGSWSDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDAGAVPIYFGAPNVLDFVPPKSIIDGSKFSSLENLASYVKQVANDPVAYSEYHAWRRCGVMGNYHRTRAVSLDSLPCRLCGLISKLGGKHASTQ*

Protein Length: 398

Fln nts: CGTCGTGACCTTGGCGTCATCATTCCGTCCGCCATGCTCGCTTCTTCGAAGCCTCTGATCAAGAGCCTGTATTACTGTTCTGCGTCGTGACCGTGGCTGTCACTCAACTCTCACTTTAGTTGGCTATCTGGAGTTACCGCCTTCATATTCATCAGGGATCCCAAAACCATCAGACCCAACCTCACATACTTCATTCATAGAAGAGCCATTTACAGAAGTACTCACTGCCTTCAGAAAATGGGATGCCCAAGTGGGTTGCAAGAAGTTCAGAGAAGAGTACCGAGAAATACCAACAAATGTTTCAAGCTTGCAAGATCCGGATGGGATTGCCTGCAATTCATTGAATCTGAATCATGTCTCTATTTTGGTTAAGGGGTGGACTTGGATTCCGGACAATTTGAATAACTTGTATTCCTGTAGATGTGGGCTCTCTTGTCTATGGACTAAATCTGAAGTTCTTGTGGACGAACCAGAGGCAGTTTTCTTTGAGACCACCACTCCCCCATTGAAGAGGCGTAAAGGAGAACCATTAAGAGTGTATTTGGATCTGGAGGCTGGAAGGAGATCTAGCTCTTTTGCAGATATTTTTGTCAGTTACCATGCTGGAGATGATGTGCAAGCAACATATGCAGGAGCCCTATTTCATAATAATCGTAACTATTATGTGTCTCCTGATAAGAACAATGATATACTTGTATATTGGTCTTCCTCAAGATGTCTGAGAGACAGGAATGAACTTGCTGGAAGGCTGCTTTCTATGCTTCCTCATCACTCATTTGGAAAGTGCCTGAACAATGTTAATGGAAAAGACATGGCATTACGCCTGTATCCAGAATGCCGACCAAATCATGTGGGTAGTTGGTCTGATCATCTTCATTGTGCAATGTCACATTACAAATTTGTCTTAGCTATTGAAAACACTATGACTGAAAGCTATGTTACAGAGAAATTGTTCTATGCTTTGGATGCTGGGGCAGTACCAATATATTTTGGTGCTCCAAATGTTTTGGATTTTGTGCCTCCAAAATCTATAATTGATGGGTCCAAATTTAGTTCCTTAGAAAATTTAGCTTCATATGTAAAGCAAGTTGCAAATGATCCTGTAGCTTACAGTGAATACCATGCTTGGCGGCGTTGTGGTGTCATGGGGAACTATCACAGGACTCGGGCAGTCAGCCTTGATTCCTTACCTTGTCGCCTTTGTGGGTTGATAAGCAAACTTGGAGGGAAACATGCATCAACTCAGTGA___AACATAATCTGAATAGTATCTTCATTTTTTAACATGGTCTTATTAAAATGGCACTGGTGTTCATTTGGGAATGTGTTCCAGAGATCAGTGCCCTAAATTTTGGCTGCTTGAATGTGGTTTGAGCCTTGAAATAAAAATCATCTTTTCATGAATGCATTTTCTAAGTAGTCTGCAGTGGGTTATAATTCATACCAAGGGGTTCAGTAGGTAACAGACAAGGCAATCACAGGAAGAACCAGCAAGTTAGCTTTTATAACCGTGCAAGATGCATTATTTCATTTGACAATGTAATTTTTTGACTATTAATCTTATTACAGCTTCTTAGTACC

Fln Alignment:

sp_v1.1_unigene13462___LTLVGYLELPPSYSS------GIPKPSDPTSHTSFIEEPFTEVLTAFRKWDAQVGCKKFREEYRE-IPTNVSS--LQDPDGIACNSLNLNHVSILVKGWTWIPDNLNNLYSCRCGLSCLWTKSEVLVDEPEAVFFETTTPPLKRRKGEPLRVYLDLEAGRRSSSFADIFVSYHAGDDVQATYAGALFHNNRNYYVSPDKNNDILVYWSSSRCLRDRNELAGRLLSMLPHHSFGKCLNNVNGKDMALRLYPECRPNH--VGSWSDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDAGAVPIYFGAPNVLDFVPPKSIIDGSKFSSLENLASYVKQVANDPVAYSEYHAWRRCGVMGNYHRTRAVSLDSLPCRLCGLISKLGGKHA
Q9C8W3_______________LSFTGILEFPSASTSMEHSIDPEPKLSDSTS------DPFSDVLVAYKKWDFEVGCARFRENHKDAILGNVSSGSLQE---FGCGKLKMKHVKVLVKGWTWIPDNLENLYSCRCGMTCLWTKSSVLADSPDALLFETTTPPLQRRVGDPLRVYMELEAGRKRSGREDIFISYHAKDDVQTTYAGSLFHNNRNYHISPHKNNDVLVYWSSSRCLPHRDRLAKSLLDLIPHHSFGKCLNNVGGLDSALSMYPECVAEHNAEAKWYDHLHCAMSHYKFVLAIENTAVESYVTEKLFYALDSGSVPIYFGASNVQDFVPPHSVIDGSKFGSMQELAAYVKRLGDDPVAYSEYHAWRRCGLMGNYGKTRAVSLDTLPCRLCEEISRRGGKNA

SNPs (tot: 103)

Position	A %	C %	G %	T %	Probability
71		60		40	1.0
80	60		40		1.0
113		11		88	0.923564
145	22			77	0.999999
178		11		88	0.923564
198	87		12		0.992554
238		33	66		1.0
314		85		14	0.999981
315			14	85	0.999981
317			14	85	0.999981
319		85	14		0.999981
321		14	85		0.999981
323		14		85	0.999981
324		14		85	0.999981
326	14			85	0.999981
329			14	85	0.999981
364	16	83			0.999991
365			16	83	0.999991
367	83		16		0.999991
368	16			83	0.999991
372		75	16		0.99999
378	75		16		0.99999
379	83		16		0.999991
380		16	83		0.999991
381	16		83		0.999991
690	15			84	0.999986
695	15			84	0.999986
696			15	84	0.999986
701	84		15		0.999986
703		15		84	0.999986
757	11	88			0.923564
765		85		14	0.993533
766	85		14		0.993533
767	14			85	0.993533
770		85	14		0.993533
771	14			85	0.993533
772		14		85	0.993533
773	14			85	0.993533
774			14	85	0.993533
778			14	85	0.993533
780	85	14			0.993533
783	85		14		0.993533
784	14			85	0.993533
785		14		85	0.993533
826	90			10	0.999898
828		85	5		0.999793
831	20	65			1.0
832		65	20		1.0
834			35	65	1.0
835	35	65			1.0
844			35	65	1.0
848		35		65	1.0
849			40	60	1.0
850	40	60			1.0
890	83		16		0.999991
891	16			83	0.999991
892	75		16		0.99999
894		75	25		1.0
896		16	8	75	0.99999
897	16			83	0.999991
899		15		76	0.999983
900	7	15		76	0.999983
901	15	84			0.999986
902	15			76	0.999983
903	7		15	76	0.999983
904	76		23		1.0
908	7	15	76		0.999983
930		11		88	0.923564
939	90	10			0.90298
940		10		90	0.90298
942	10		90		0.90298
949			10	90	0.90298
950	10		90		0.90298
952	90		10		0.90298
958		11		88	0.923564
1160		50		50	1.0
1457		71		28	1.0
1458		71	28		1.0
1460	71		28		1.0
1461		71		28	1.0
1462			28	71	1.0
1464	71	28			1.0
1467		28		71	1.0
1468		28	71		1.0
1470		14	57		1.0
1472	28		57		1.0
1473	14	14	28	28	1.0
1474		14		85	0.993533
1475	14	28	57		1.0
1477		14	42	14	1.0
1478	28	28		28	1.0
1480	71	14		14	0.984337
1483	14		71		0.984337
1484		60	20	20	0.99255
1485	20	40	20	20	0.994159
1486	80		20		0.995493
1487	40	40	20		1.0
1488		20	80		0.995493
1489			75	25	0.996473
1491	33	66			0.997452
1494	33		66		0.997452
1495	66			33	0.997452
1496		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain