SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13460

Length: 1466 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13460

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ribulose-5-phosphate-3-epimerase n=2 Tax=Arabidopsis RepID=Q9SAU2_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ribulose-phosphate 3-epimerase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribulose-phosphate 3-epimerase.	EC:5.1.3.1	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	91%
Blast2go	Pentose and glucuronate interconversions	00040	91%
Blast2go	Carbon fixation in photosynthetic organisms	00710	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	reductive pentose-phosphate cycle	GO:0019253	Biological Process	91%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	91%
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	91%
Blast2go	response to cold	GO:0009409	Biological Process	91%
Blast2go	response to nematode	GO:0009624	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	ribulose-phosphate 3-epimerase activity	GO:0004750	Molecular Function	91%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	stromule	GO:0010319	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP17

Fln msg:

Fln protein: MSTAATSICATVAMVGSQSTHSMGVCRSPFWGKKHNMAFACPQLANSSRKVLSTVKASSRVDKFSKTDIIVSPSILSANFATLGDQVKAVELAGCDWVHVDVMDGRFVPNITIGPLVVAALRPITDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAERGVNPWIEVDGGVTPSNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKKPTPVAA*

Protein Length: 294

Fln nts: ATGGGGGCAGGTTTGGAAGAATAATTTATTAATTAACTCAATTCACAGGCAACTTCTTGTGTAGATAAGTTTTAAAATTTTCTCGGCCAGACACGTGGCTGCTCCTTACCTATTTCAATATCCATTTCTGGAGCCCGATTACAGAGTCCACCCAACCTCTTCTGCATTTCGAGTTTACCAAGATATCCAGTCACATTTTTTAAATTTCATTTTGTTGCCTTGAGGTCTAGAGATCGATTCTTAGGC_-_ATGTCAACAGCAGCGACATCAATATGCGCCACGGTCGCCATGGTGGGTTCTCAGAGCACCCATTCTATGGGTGTCTGCCGTAGTCCGTTCTGGGGAAAGAAGCATAACATGGCCTTTGCATGCCCCCAATTGGCGAACTCTTCAAGGAAAGTTCTCTCTACAGTGAAGGCATCTTCCCGAGTTGACAAGTTCTCCAAAACTGACATCATTGTCTCTCCTTCTATTCTTTCTGCAAATTTTGCAACATTAGGTGACCAGGTCAAAGCTGTCGAGTTGGCAGGTTGCGATTGGGTTCATGTTGATGTTATGGATGGGCGTTTTGTGCCAAATATTACCATTGGACCTCTGGTGGTGGCTGCATTACGACCCATAACAGATTTGCCACTGGATGTACATTTGATGATTGTTGAACCGGAACAACGTGTACCAGATTTTATCAAGGCTGGTGCAGACATTGTTAGTGTCCACTGTGAGCAATCTTCCACTATCCATTTGCACCGAACAGTAAATCAGATCAAGTCTCTTGGAGCGAAAGCTGGAGTGGTATTGAACCCAGCAACTCCTTTAAGTTGTATAGAATATGTTCTTGATGTGGTAGACTTGGTCTTAATTATGTCAGTCAATCCCGGCTTTGGTGGGCAGAGCTTTATAGAAAGTCAAGTGAAGAAAATCTCAGACCTAAGGAGAATGTGTGCGGAGAGGGGCGTGAACCCATGGATTGAGGTGGATGGTGGTGTTACTCCCTCAAATGCCTACAAGGTTATTGAAGCTGGGGCCAATGCGCTGGTGGCGGGATCTGCAGTATTTGGAGCAAAAGATTATGCTGAAGCTATTAAGGGCATCAAGACCAGTAAGAAGCCAACACCAGTTGCAGCATGA___GACCAGTTTTTAATAAGTCGACTTTTATGCAGTATATGGTTCCGATTCTATCGTCAGTTTAGCAGATCGATCTCTTGTTCTGCCCTGAAACAAGCCAGAACTGATGTGAAGGGTCACTAGTTGCCATTCTGTGGCAAGTGTAATATTATTTATTATTTTTCATTATCCATGTAACTTGCAAAATCACACGAATAAGAATGCCTACAAATAAGAATGCTTACAAAAGTTTGCAAATTGTAGGAAAATCTTAAATGGAAATTAATTCCTTAAAAGCTATGAAAAAAAGTGACAGTATACTCGTGACCTATAGAAAGGTAAACTTTGAATATGCATGGTTTTTT

Fln Alignment:

sp_v1.1_unigene13460___MSTAATSICATVAMVGSQSTHSMGVCRSPFWGKKHNMAFACPQLANSSRKVLSTVKASSRVDKFSKTDIIVSPSILSANFATLGDQVKAVELAGCDWVHVDVMDGRFVPNITIGPLVVAALRPITDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAERGVNPWIEVDGGVTPSNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKKPTPVAA
A9NP17_______________MSTAATSICATAAMLGSQSTHSVGVCQSPFWGKKHNMAFACPQLATSSRKVLPTVKASSRVDKFSKTDIIVSPSILSANFATLGEQVKAVELAGCDWVHVDVMDGRFVPNITIGPLVVAALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAERGVNPWIEVDGGVTPSNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPTPVAA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
87	33	66			0.997452
359	11		88		0.923564
1174		94		5	0.998578
1388	80			13	0.999961

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain