SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13439

Length: 840 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13439

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin ligase apc2, putative; K03349 anaphase-promoting complex subunit 2	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	e3 ubiquitin ligase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cullin, N-terminal	IPR001373	-	0.0	73%
Blast2go	Cullin homology	IPR016158	-	0.0	73%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
695		25		75	0.996473
806	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain