SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13399

Length: 450 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13399
GCAGCATTTTTATGGTTAAGAATCAAGGAGCCAGGAATTGCTCGGCCCTATAAAGTTCCTCTTGGGATTGTTGGAGTCGTTATTCTCTGCCTAATACCTTCATTGCTACTTTTGGTTGTAGCAATTGCTTCCTTTAAAGTGATGGCTATCAGCATCAGTGCTGTTTTAATTGGGTTTGTACTGTGGGCATGTCTTATGTTTGTGAAGAAGAAGAAATGGGTGAACTTTGTGACAGTTTCAGAGCTTCCATGTGGTCCTTGTTATTTAATAGTGCCTGATGCAGGAGTTGGGTTGCTTTCAACTGAAAGCACCTAAAGTCTTCTGTTCGAGCACATGACCTTTTTTACATTCTTGCTCATTCCAGAGGAAGGTGAAGAATCGGTGTATTAATATTGAGGAGTTTGACTGTGGCAAAACAGCATATGACAAGTCCTGTAGTGGAGGGTAATC

Ace file of the UniGene sp_v1.1_unigene13399

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9S1L4_RICCO	-	-	2.0e-09	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	hypothetical protein SORBIDRAFT_07g004285 [Sorghum bicolor]	-	-	6.10209e-11	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	6.10209e-11	75%
Blast2go	membrane	GO:0016020	Cellular Component	6.10209e-11	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid/polyamine transporter I	IPR002293	-	6.10209e-11	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPK8

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 105 - 502

Fln protein: AAFLWLRIKEPGIARPYKVPLGIVGVVILCLIPSLLLLVVAIASFKVMAISISAVLIGFVLWACLMFVKKKKWVNFVTVSELPCGPCYLIVPDAGVGLLSTEST*

Protein Length: 106

Fln nts: GCAGCATTTTTATGGTTAAGAATCAAGGAGCCAGGAATTGCTCGGCCCTATAAAGTTCCTCTTGGGATTGTTGGAGTCGTTATTCTCTGCCTAATACCTTCATTGCTACTTTTGGTTGTAGCAATTGCTTCCTTTAAAGTGATGGCTATCAGCATCAGTGCTGTTTTAATTGGGTTTGTACTGTGGGCATGTCTTATGTTTGTGAAGAAGAAGAAATGGGTGAACTTTGTGACAGTTTCAGAGCTTCCATGTGGTCCTTGTTATTTAATAGTGCCTGATGCAGGAGTTGGGTTGCTTTCAACTGAAAGCACCTAA___AGTCTTCTGTTCGAGCACATGACCTTTTTTACATTCTTGCTCATTCCAGAGGAAGGTGAAGAATCGGTGTATTAATATTGAGGAGTTTGACTGTGGCAAAACAGCATATGACAAGTCCTGTAGTGGAGGGTAATC

Fln Alignment:

sp_v1.1_unigene13399___AAFLWLRIKEPGIARPYKVPLGIVG-XXXXXXXXXXXXXXXXXASFKVMAISISAVLIGFVLWACLMFVKKKKWVNFV
B8LPK8_______________AAFVWLRIKHPDLQRPYKVPLNTFWVTVLCIPPSVLLIIVMCLAAFKTLIVSSTVVIVGFLLYPCIGYMKARECLKFV

SSRs (tot: 1)

Start position	End position	Sequence	Length
204	215	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain