SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13387

Length: 3334 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13387
ATGGGAATCTCTTTAGCAGGTGGATGATTTTGAATTGATCTTGTCGATGTTGCATTGATCTTTGCTCTCACAGTCTGCATATTATCAAAGCTATTTGTTGGATTCTGGCATGGAGAGTCTCGGTCCAGTTGAGAAAAAACCAATTTTCCGCACTAATATGGAAGTATTGAAGTGTTAATCAAGTGGGTGTTTGGCAGTTCGTTTGCTTGTCTGAGTTTACATCAACCCATTTGGTGCATTGTTGTGATTGGGCCATTAGCCCTTGCAGAGGAGTAGATCCTATTTGGGTTCTAAACTCTGTCTTGGCCGAGAAAACAAACCTGCAGTTCAGACAGGTAGTTCACATTGAAGTTCTTGGTAGGTGATAAAACGTGGGGCTACTGAATTCTCCAAAATGAGGAGGCATGGCTGGGAACTGCCTTACCATCCTCTTCAGGTTGTGGCCATTGCAGTGTTCCTGGCATTAGCATTTGCTTTCTATGTATTTTTTGTTCCTTTTGTGGGGAGGAAAGATTTTGAGTACAGCGTCACTGGTCTTTTCTCTTTTCTGGTTGTCTCTGTTTTTAGTCTCTATATCTGGTGTGCGGCCAGTGATCCAGCAGATCCTGCTGTTTTAACATCTAAGAAATATTGCAGAACATCAGAGTTTGGAAGGGCTTTGTCCTTCAAAGACTCTTTACCAGGACCAGGTTCAGCTAATGGTGCAAATACGGAGTCAATGGGAGAGAAAACACACTCAGATGGATCTTTTGTTACTGTGATACCAATTAACGAATCAGTCAATCAAGTGAAAAAGGAGAGTGGTTCGAGGATTCTATTGTCTTCCTGCATAATTCTTTTCGCTTGGTTTCCTCTGGCTCACAAATTGAAGAGCTTATGTGGTAGCAAGGCATCTTTAGAGCGGCAGACTTGTGAGGATGACATGCTTTATTGCAGCTTATGTGAAGTGGAGATTTTTAAATACAGCAAGCATTGTCGAGTATGTGACAAATGTGTAGATGGTTTTGATCATCATTGTCGGTGGATTAACAATTGTATTGGAAGAAAGAACTACAAGGAATTTTTCGTCCTTATGGTATCTGCCTTATTCTTGCTTATTCTGCAGTGGTCAACAGGAATCTTTGTACTAGTGCGCTGCTTTCTTGATCGGAATCACTTTCATGCAGAGATTATGTCTAAGCTGGGCAGTAGTTTCTCTCTTGGACCATTCATTGTGGTATTGGGTTCTTGCACTATTTTGGCTATGGTTGCTACACTTCCTCTTGGACAACTTTTCTTCTTTCACATTTTGCTCATAAAAAAGGGTGTCAGCACGTATGATTATATTGTAGCAATGAGGGAGCAAGAACAGCAAAATATGGATGAAGGAACACAGAGTCCTCAAATGTCACATGCAAGCTCCATCTCAGCATTCAGTGGTCCAAGCTCAATTAATGCTTTGCAACATGGCTCTTGGTGCAATCCCCCACAGCTATTTGTCGAGAATGCTGTATTGCCACCGGATAATATCAAGTCTTCTATCAAGGGAGGTAATGGAAGTATAAATAGGACACCTAGTGAACGAATGGTACAAAGGAACAAGAGGCCAGTGAAACTAAGTCCTTGGGCCCTAGCTCGTATGAATGCTGAAGAGGTTTCAAGGGTAGCTGCCCAAGCGAGAAAGAAGTCCAAAGTTCTGCGTCCCATATCCAAACAAGAAGGTATGATAGTGATAGAGACTGACAGTAGCCTGGAAAGCAGCAGTAGAGATCTAAGCACAGAAATAAAGTATCTAGCTGACAATAAGAGGCGAATTTACAAGCGTGGTAGGACACAATCTTCCATTAACAATTTTCCTTTTGCAAGATCTTTGAAGTCAACTAAAGTTTCTTCTGAATCTGGGAATAAGTCAAATTTCAATGGCAACGACGATCTTATGGATATCAACCAGCCAATTATAGAAGGCTCTGTTGGATTGGCTCCTCTACAGTTAGAGGCACGCAGTGCATTCAGATCTAGTCTGGCAATGTCTACTAGTGGGTTGATACCATCATCAGCTGAAAGCAGTCTTGCTTCACCTGACCTTCAACATTTCAGGGAATCAATATCAAGCCAGCAAGACATATCAACGCTTTCAGCAGCTCCTTCATGCATTATTACTAAAGGTCCCAAGCTCCAAAGGTCTACCAGCGATGGGTATGAAGCATCTGGAGGGGAAAGTGCTGATGATAGTGACCGATCCTCAACAAGATTCCACAAACCACCATGGAATAAACTGCTTTTCAATTCTGCTTATATGGGAAAAAAGAAAACTGCTAAGCCATTACCCTACCGGACAAGCCTGCTGCCATACAGTGCGAGTAAACTAAAAACAGCAGGTCAGACAACAGAGCGAAGAATGCAAGCAATCACTGGGAAAGGTGTAATGAGAGATATTCCTGAAGGAATTGATCATCCAATAGAAGAGATCAATTCTTCTCCTTCACAATTTGATTCACCAGAAAGGGATTCAGATATCTTCAATGTGAAAGAGTCTGGCCTTGAGAATTCTTCCAGGAAGGGCATGAAATCCACTACTTGTGCAAGTGCAGTTCCTTCGGTTCAAGGATCCTTGAACTTAAAAGTCATTTCACCCACTCAAAGATTACAAAATCAGAAATGACAGACTGAAATGAGTGTTTACTGGGAAATGGTGCTTTACCATTTTCCAATCTGTTTACACTGTCATAAAAAAACTCTTGGAATCCATATTTCTAGAATAGGATAAGGATTGACACAGCCATGATAGGCTGTCAACAGTGTTCCAAGCACTGTGCGGGTTGCAGGCATGAGTCTTTCCCTCAATCTACTGTACATCATCGTTCCTTTGTGAGATGTAGCATTAATCTAAATTTAAGAACAGCCCCTGGTTTATTCTATTCATGCATACAAGAATTACACTCGTAGTGCCAAGCAGCAAAGCTTATGCAAAGTTTATTTTTTGATTAACATTATATTATCAGAGTAGGAGGCAGCACAGCTGTAGCTTCCTATGTGGCTGCTAATTCTAAATTCCAATAAAGTACTAAAGCTTTCCATTTTTCCAGAAAATAACAGTACTGTATGGAGCCTACCAGATGACTCCATAGCCACTGCTGGCATATACACTGCACTTTCTACTGCATTCATACTAACATGGCAGCCATGTCAGTCTAGAAGATCAATTGTGAAGTACTCTGAGATTATGGGAATACATTTGAATTTATTCCTGTCTTGTGAAATGGCTTAGATTGTTTGCTTCAACTAGAAAGCAATCAAGCATTTCAAGACATGTCCTGTACTTAATACCTTGTTTATTAAATAGAGTCTTCTCTAC

Ace file of the UniGene sp_v1.1_unigene13387

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S925_RICCO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	metal ion binding protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	61%
Blast2go	membrane	GO:0016020	Cellular Component	61%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMN6

Fln msg: your sequence is longer than subject: 749 - 284

Fln protein: MRRHGWELPYHPLQVVAIAVFLALAFAFYVFFVPFVGRKDFEYSVTGLFSFLVVSVFSLYIWCAASDPADPAVLTSKKYCRTSEFGRALSFKDSLPGPGSANGANTESMGEKTHSDGSFVTVIPINESVNQVKKESGSRILLSSCIILFAWFPLAHKLKSLCGSKASLERQTCEDDMLYCSLCEVEIFKYSKHCRVCDKCVDGFDHHCRWINNCIGRKNYKEFFVLMVSALFLLILQWSTGIFVLVRCFLDRNHFHAEIMSKLGSSFSLGPFIVVLGSCTILAMVATLPLGQLFFFHILLIKKGVSTYDYIVAMREQEQQNMDEGTQSPQMSHASSISAFSGPSSINALQHGSWCNPPQLFVENAVLPPDNIKSSIKGGNGSINRTPSERMVQRNKRPVKLSPWALARMNAEEVSRVAAQARKKSKVLRPISKQEGMIVIETDSSLESSSRDLSTEIKYLADNKRRIYKRGRTQSSINNFPFARSLKSTKVSSESGNKSNFNGNDDLMDINQPIIEGSVGLAPLQLEARSAFRSSLAMSTSGLIPSSAESSLASPDLQHFRESISSQQDISTLSAAPSCIITKGPKLQRSTSDGYEASGGESADDSDRSSTRFHKPPWNKLLFNSAYMGKKKTAKPLPYRTSLLPYSASKLKTAGQTTERRMQAITGKGVMRDIPEGIDHPIEEINSSPSQFDSPERDSDIFNVKESGLENSSRKGMKSTTCASAVPSVQGSLNLKVISPTQRLQNQK*

Protein Length: 750

Fln nts: ATGGGAATCTCTTTAGCAGGTGGATGATTTTGAATTGATCTTGTCGATGTTGCATTGATCTTTGCTCTCACAGTCTGCATATTATCAAAGCTATTTGTTGGATTCTGGCATGGAGAGTCTCGGTCCAGTTGAGAAAAAACCAATTTTCCGCACTAATATGGAAGTATTGAAGTGTTAATCAAGTGGGTGTTTGGCAGTTCGTTTGCTTGTCTGAGTTTACATCAACCCATTTGGTGCATTGTTGTGATTGGGCCATTAGCCCTTGCAGAGGAGTAGATCCTATTTGGGTTCTAAACTCTGTCTTGGCCGAGAAAACAAACCTGCAGTTCAGACAGGTAGTTCACATTGAAGTTCTTGGTAGGTGATAAAACGTGGGGCTACTGAATTCTCCAAA_-_ATGAGGAGGCATGGCTGGGAACTGCCTTACCATCCTCTTCAGGTTGTGGCCATTGCAGTGTTCCTGGCATTAGCATTTGCTTTCTATGTATTTTTTGTTCCTTTTGTGGGGAGGAAAGATTTTGAGTACAGCGTCACTGGTCTTTTCTCTTTTCTGGTTGTCTCTGTTTTTAGTCTCTATATCTGGTGTGCGGCCAGTGATCCAGCAGATCCTGCTGTTTTAACATCTAAGAAATATTGCAGAACATCAGAGTTTGGAAGGGCTTTGTCCTTCAAAGACTCTTTACCAGGACCAGGTTCAGCTAATGGTGCAAATACGGAGTCAATGGGAGAGAAAACACACTCAGATGGATCTTTTGTTACTGTGATACCAATTAACGAATCAGTCAATCAAGTGAAAAAGGAGAGTGGTTCGAGGATTCTATTGTCTTCCTGCATAATTCTTTTCGCTTGGTTTCCTCTGGCTCACAAATTGAAGAGCTTATGTGGTAGCAAGGCATCTTTAGAGCGGCAGACTTGTGAGGATGACATGCTTTATTGCAGCTTATGTGAAGTGGAGATTTTTAAATACAGCAAGCATTGTCGAGTATGTGACAAATGTGTAGATGGTTTTGATCATCATTGTCGGTGGATTAACAATTGTATTGGAAGAAAGAACTACAAGGAATTTTTCGTCCTTATGGTATCTGCCTTATTCTTGCTTATTCTGCAGTGGTCAACAGGAATCTTTGTACTAGTGCGCTGCTTTCTTGATCGGAATCACTTTCATGCAGAGATTATGTCTAAGCTGGGCAGTAGTTTCTCTCTTGGACCATTCATTGTGGTATTGGGTTCTTGCACTATTTTGGCTATGGTTGCTACACTTCCTCTTGGACAACTTTTCTTCTTTCACATTTTGCTCATAAAAAAGGGTGTCAGCACGTATGATTATATTGTAGCAATGAGGGAGCAAGAACAGCAAAATATGGATGAAGGAACACAGAGTCCTCAAATGTCACATGCAAGCTCCATCTCAGCATTCAGTGGTCCAAGCTCAATTAATGCTTTGCAACATGGCTCTTGGTGCAATCCCCCACAGCTATTTGTCGAGAATGCTGTATTGCCACCGGATAATATCAAGTCTTCTATCAAGGGAGGTAATGGAAGTATAAATAGGACACCTAGTGAACGAATGGTACAAAGGAACAAGAGGCCAGTGAAACTAAGTCCTTGGGCCCTAGCTCGTATGAATGCTGAAGAGGTTTCAAGGGTAGCTGCCCAAGCGAGAAAGAAGTCCAAAGTTCTGCGTCCCATATCCAAACAAGAAGGTATGATAGTGATAGAGACTGACAGTAGCCTGGAAAGCAGCAGTAGAGATCTAAGCACAGAAATAAAGTATCTAGCTGACAATAAGAGGCGAATTTACAAGCGTGGTAGGACACAATCTTCCATTAACAATTTTCCTTTTGCAAGATCTTTGAAGTCAACTAAAGTTTCTTCTGAATCTGGGAATAAGTCAAATTTCAATGGCAACGACGATCTTATGGATATCAACCAGCCAATTATAGAAGGCTCTGTTGGATTGGCTCCTCTACAGTTAGAGGCACGCAGTGCATTCAGATCTAGTCTGGCAATGTCTACTAGTGGGTTGATACCATCATCAGCTGAAAGCAGTCTTGCTTCACCTGACCTTCAACATTTCAGGGAATCAATATCAAGCCAGCAAGACATATCAACGCTTTCAGCAGCTCCTTCATGCATTATTACTAAAGGTCCCAAGCTCCAAAGGTCTACCAGCGATGGGTATGAAGCATCTGGAGGGGAAAGTGCTGATGATAGTGACCGATCCTCAACAAGATTCCACAAACCACCATGGAATAAACTGCTTTTCAATTCTGCTTATATGGGAAAAAAGAAAACTGCTAAGCCATTACCCTACCGGACAAGCCTGCTGCCATACAGTGCGAGTAAACTAAAAACAGCAGGTCAGACAACAGAGCGAAGAATGCAAGCAATCACTGGGAAAGGTGTAATGAGAGATATTCCTGAAGGAATTGATCATCCAATAGAAGAGATCAATTCTTCTCCTTCACAATTTGATTCACCAGAAAGGGATTCAGATATCTTCAATGTGAAAGAGTCTGGCCTTGAGAATTCTTCCAGGAAGGGCATGAAATCCACTACTTGTGCAAGTGCAGTTCCTTCGGTTCAAGGATCCTTGAACTTAAAAGTCATTTCACCCACTCAAAGATTACAAAATCAGAAATGA___CAGACTGAAATGAGTGTTTACTGGGAAATGGTGCTTTACCATTTTCCAATCTGTTTACACTGTCATAAAAAAACTCTTGGAATCCATATTTCTAGAATAGGATAAGGATTGACACAGCCATGATAGGCTGTCAACAGTGTTCCAAGCACTGTGCGGGTTGCAGGCATGAGTCTTTCCCTCAATCTACTGTACATCATCGTTCCTTTGTGAGATGTAGCATTAATCTAAATTTAAGAACAGCCCCTGGTTTATTCTATTCATGCATACAAGAATTACACTCGTAGTGCCAAGCAGCAAAGCTTATGCAAAGTTTATTTTTTGATTAACATTATATTATCAGAGTAGGAGGCAGCACAGCTGTAGCTTCCTATGTGGCTGCTAATTCTAAATTCCAATAAAGTACTAAAGCTTTCCATTTTTCCAGAAAATAACAGTACTGTATGGAGCCTACCAGATGACTCCATAGCCACTGCTGGCATATACACTGCACTTTCTACTGCATTCATACTAACATGGCAGCCATGTCAGTCTAGAAGATCAATTGTGAAGTACTCTGAGATTATGGGAATACATTTGAATTTATTCCTGTCTTGTGAAATGGCTTAGATTGTTTGCTTCAACTAGAAAGCAATCAAGCATTTCAAGACATGTCCTGTACTTAATACCTTGTTTATTAAATAGAGTCTTCTCTAC

Fln Alignment:

sp_v1.1_unigene13387___DMLYCSLCEVEIFKYSKHCRVCDKCVDGFDHHCRWINNCIGRKNYKEFFVLMVSALFLLILQWSTGIFVLVRCFLDRNHFHAEIMSKLGSSFSLGPFIVVLGSCTILAMVATLPLGQLFFFHILLIKKGVSTYDYIVAMR
B8LMN6_______________DLRYCQKCGQYKPPRAHHCRVCKRCVLRMDHHCVWINNCVGHENYKAFFLFVL----YVVLACIYALVLLVGSAIQELH---DEERRSGNIFKTSYIL-----CGLIVIPLTVALIVLLVWHMYLLSHNKTTIEYHEGVR

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1545	66			33	0.997452
1546	66		33		0.997452
1547			33	66	0.997452
1548	66		33		0.997452
1579	75			25	0.996473
1580		75	25		0.996473
1581	75		25		0.996473
1766	83		16		0.994512
1767	83		16		0.994512
1768	83		16		0.994512
1946		87		12	0.992554
2325	25	75			0.996473
2328		75	25		0.996473
2329		75	25		0.996473
2367	14		85		0.993533
2566	16		83		0.994512
2618		16		83	0.994512
2753	12		87		0.992554
2784		85	14		0.999981
2785		85	14		0.999981
2796		84		15	0.999986
2884	16	83			0.999991
2909		81		18	0.999994
2968	87		12		0.992554
2990	88			11	0.923564
2991		11	88		0.923564
2992			88	11	0.923564
3090		83		16	0.994512
3251		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain