SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13385

Length: 517 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13385
GAACATTCCATGGACAGAACTACTGAAGCCGCAGAGGTAGCTAAAGGAGGTCATTGGTCAATTTCAGAAGGGCTGAATTCTACTTCAGAAGATAGATCCAATCAGAAGGGAATGATGGAAGAAGGGAAACTAATCACAAAGCAGAGAAAAATGGCAGTTCTGTATGAGCTTTTGGCAGCTTGTGTTGCCGATACACCTGAAGATGAAAAGAAAAAGTCTAGGTTGAGAAGAGGATATGATGCTCGGCATCGTGCTGCTTTACGGCTATTGGCTACATGGCTTGATATCACGTGGTTAAAAGTGGGAGCTATGGAACTTATGGTTGCATGCTCAGCAATGGCTATACAGAAGCAGAGAGAAGCTGAAGCACAGGAGACTGAAAAAGAGAAGAGTAAATGGTCAAAATGGAAGCGTGGTGGTATAATTGGTGCTGCAGCTTTGACTGGAGGGACGTTGCTGGCCATCACTGGAGGCCTGGCAGCTCCAGCTATTGCTGCAGGGTTGAGTGCTCTGGCAC

Ace file of the UniGene sp_v1.1_unigene13385

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF726 domain containing protein	-	-	8.0e-10	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	protein	-	-	5.04075e-19	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	5.04075e-19	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF726	IPR007941	-	5.04075e-19	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SP33

Fln msg: Distance to subject end: 327 aas, your sequence is shorter than subject: 172 - 662

Fln protein: EHSMDRTTEAAEVAKGGHWSISEGLNSTSEDRSNQKGMMEEGKLITKQRKMAVLYELLAACVADTPEDEKKKSRLRRGYDARHRAALRLLATWLDITWLKVGAMELMVACSAMAIQKQREAEAQETEKEKSKWSKWKRGGIIGAAALTGGTLLAITGGLAAPAIAAGLSALA

Protein Length: 173

Fln nts: GAACATTCCATGGACAGAACTACTGAAGCCGCAGAGGTAGCTAAAGGAGGTCATTGGTCAATTTCAGAAGGGCTGAATTCTACTTCAGAAGATAGATCCAATCAGAAGGGAATGATGGAAGAAGGGAAACTAATCACAAAGCAGAGAAAAATGGCAGTTCTGTATGAGCTTTTGGCAGCTTGTGTTGCCGATACACCTGAAGATGAAAAGAAAAAGTCTAGGTTGAGAAGAGGATATGATGCTCGGCATCGTGCTGCTTTACGGCTATTGGCTACATGGCTTGATATCACGTGGTTAAAAGTGGGAGCTATGGAACTTATGGTTGCATGCTCAGCAATGGCTATACAGAAGCAGAGAGAAGCTGAAGCACAGGAGACTGAAAAAGAGAAGAGTAAATGGTCAAAATGGAAGCGTGGTGGTATAATTGGTGCTGCAGCTTTGACTGGAGGGACGTTGCTGGCCATCACTGGAGGCCTGGCAGCTCCAGCTATTGCTGCAGGGTTGAGTGCTCTGGCAC

Fln Alignment:

sp_v1.1_unigene13385___MEEGKLITKQRKMAVLYELLAACVADTPEDEKKKSRLRRGYDXXXXXXXXXXXTWLDITWLKVGAMELMVACSAMAIQKQREAEAQET
D7SP33_______________VEEVAMLNYPRKVTVLYELLSACLTDTPEDNKKSTRKRKGYDARHRVALRLLATWLDIQWKKVEAMEIMVACSAMALSKEQASKEEET

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
444		83	16		0.994512
445			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain