SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13374

Length: 2205 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene13374
ATGGGAACAAGAGGTCTATGCTGCACGAGAGAAGAATGGCATATATCTTCCACGTGAACGTTTCCTCCTGGATGAAGCTGAAAAAAAGGCTATGACAGAGAAGATAGAACAGTTGGAGGTAGAAATTGATGCCAAGAACAAGGGAATAGAGGAGTTGCAAGGACTCTACAATTATCAGCAACTTCTGAGTGCAGAATTTAGCAATAAGCTTGAGATGACCCAGAAAAAACTTGAGGATACTGAGTATGCCTTAGATGATCTCGAAGAGAAATACAGTCAGCTGAGCTGTACACTTAAGGAAAAAGAATTCATCATCTCCAACATGTTACAGTCAGAAAAAGCACTGGTTGAGCAGGCATGTGGTCTTCGGTCAGAACTAGAGAACACAACACAAGATGTATCAGGGCTCTTTTCTAAAATTGAGCGTAAGGATAAGATAGAAACTGGAAATAAAGAACTAGTCCAGACATTTCGAATACAGTTAACTCAGCAGCTTGAAGTGTTGCATAAGACTGTTGAAGGTTCTGTGAGCCAACAACAACGGCAGCTACAAACTATGGAAGATCAAATGCAATCCTTTGTCTCCACAAAAACTGAGGCTACAGAAGATCTCAGAAATAGGGTTGAGAATTTGAAGACAATCTATGGCTCTGGAGTCAGGGGCTTACATGATCTAGCCAATGCACTCGATGAAAATTCTGTGTCTACTCTTGGCAGGCTCAACTCAACAATATCCATGCACGCTTCTACTCTTGAGAATCTGGTGGGAAAAACTGTTCTAGATGCAGAGGCATTGCTGAGTGAACTTCATAGTGCTCTGTCCAAGCAAGAGGCCACAATGGCTTTATATGCCCAACAACAGCGGGAGGCAATTCAAAGAACTATAGAGTCCACGAGGGTAATTTCAAAGGTGAACACAGATTTCTTTGCAACACTTGAAAGCCATGCATCTAAGCTTAGTCAGTTTGTGGAAGAAATGCAAATAGTTCACGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAAATGCTGTCAATAAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAACCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCACCAATGAAGCTGTTAAGACTGGAAATGACAGCTTGTTGTCATCCATTGACAGTTCACTGAAACTCGATCACGATGTGTGCATAAATATACACTCCATAATAACCCCTTGCACCAATGAATTTATAGAGCTACAAAGGAGTCACTATGGCAAGGTGGTAGAGACAACCAACCAAGCAGAAAAATATCTACAAGAGGAATACATGGAAGATGTGCCTTCTTGTACAACACCAAGGAGAAGGCCTATCAGTCTACCAACCATGGCTTCTATAGAGCAGTTACGAACTCCTCCCTTCGATGAATTATTGCAAATATTTCAGGATATCAAATTAGAAAATCGATCAAAACAAGGAAATGGAGAGATAAAGCATCTCATAGTGTCTGAAATTTCATCCATGAGAGACTCCAGAATACCTCTTATAGCCAAAAATTAATTGCATATTCTTTTAGTAGTAATACTACAATTTATTTGATAGAGTTATTCAAAAGTAGCATTGGGTTGGGTCGGGATTGTTTGGCTCTGTAAATTATGTACAGCATACACAGGCACAGGAAACAGAGACGTGTAGCATCAAACAATTATGAATTGGGTCCTTCAGGTCTTTGCCTGTTTTATTCGTTAGTCCTCCTCTTACAGATAGGAAGGAGCAAACATTTGGTTCCCCATTCAAAGTCATCAAAGGTGTAAGCATGTCCATGACTGGACTGTATTACAATGCAAGTCAGTCGT

Ace file of the UniGene sp_v1.1_unigene13374

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Bipolar kinesin KRP-130, putative; K10398 kinesin family member 11	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	bipolar kinesin krp-	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	67%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	67%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P3

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 606 - 353

Fln protein: MTEKIEQLEVEIDAKNKGIEELQGLYNYQQLLSAEFSNKLEMTQKKLEDTEYALDDLEEKYSQLSCTLKEKEFIISNMLQSEKALVEQACGLRSELENTTQDVSGLFSKIERKDKIETGNKELVQTFRIQLTQQLEVLHKTVEGSVSQQQRQLQTMEDQMQSFVSTKTEATEDLRNRVENLKTIYGSGVRGLHDLANALDENSVSTLGRLNSTISMHASTLENLVGKTVLDAEALLSELHSALSKQEATMALYAQQQREAIQRTIESTRVISKVNTDFFATLESHASKLSQFVEEMQIVHDKKLEDLERKFEECAANEEKKLLENFAKMLAASTARKSELVQSAVQNLRENAVNKTHELQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEANQLLLASFTQAAASTNEAVKTGNDSLLSSIDSSLKLDHDVCINIHSIITPCTNEFIELQRSHYGKVVETTNQAEKYLQEEYMEDVPSCTTPRRRPISLPTMASIEQLRTPPFDELLQIFQDIKLENRSKQGNGEIKHLIVSEISSMRDSRIPLIAKN*

Protein Length: 607

Fln nts: ATGGGAACAAGAGGTCTATGCTGCACGAGAGAAGAATGGCATATATCTTCCACGTGAACGTTTCCTCCTGGATGAAGCTGAAAAAAAGGCT_-_ATGACAGAGAAGATAGAACAGTTGGAGGTAGAAATTGATGCCAAGAACAAGGGAATAGAGGAGTTGCAAGGACTCTACAATTATCAGCAACTTCTGAGTGCAGAATTTAGCAATAAGCTTGAGATGACCCAGAAAAAACTTGAGGATACTGAGTATGCCTTAGATGATCTCGAAGAGAAATACAGTCAGCTGAGCTGTACACTTAAGGAAAAAGAATTCATCATCTCCAACATGTTACAGTCAGAAAAAGCACTGGTTGAGCAGGCATGTGGTCTTCGGTCAGAACTAGAGAACACAACACAAGATGTATCAGGGCTCTTTTCTAAAATTGAGCGTAAGGATAAGATAGAAACTGGAAATAAAGAACTAGTCCAGACATTTCGAATACAGTTAACTCAGCAGCTTGAAGTGTTGCATAAGACTGTTGAAGGTTCTGTGAGCCAACAACAACGGCAGCTACAAACTATGGAAGATCAAATGCAATCCTTTGTCTCCACAAAAACTGAGGCTACAGAAGATCTCAGAAATAGGGTTGAGAATTTGAAGACAATCTATGGCTCTGGAGTCAGGGGCTTACATGATCTAGCCAATGCACTCGATGAAAATTCTGTGTCTACTCTTGGCAGGCTCAACTCAACAATATCCATGCACGCTTCTACTCTTGAGAATCTGGTGGGAAAAACTGTTCTAGATGCAGAGGCATTGCTGAGTGAACTTCATAGTGCTCTGTCCAAGCAAGAGGCCACAATGGCTTTATATGCCCAACAACAGCGGGAGGCAATTCAAAGAACTATAGAGTCCACGAGGGTAATTTCAAAGGTGAACACAGATTTCTTTGCAACACTTGAAAGCCATGCATCTAAGCTTAGTCAGTTTGTGGAAGAAATGCAAATAGTTCACGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAAATGCTGTCAATAAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAACCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCACCAATGAAGCTGTTAAGACTGGAAATGACAGCTTGTTGTCATCCATTGACAGTTCACTGAAACTCGATCACGATGTGTGCATAAATATACACTCCATAATAACCCCTTGCACCAATGAATTTATAGAGCTACAAAGGAGTCACTATGGCAAGGTGGTAGAGACAACCAACCAAGCAGAAAAATATCTACAAGAGGAATACATGGAAGATGTGCCTTCTTGTACAACACCAAGGAGAAGGCCTATCAGTCTACCAACCATGGCTTCTATAGAGCAGTTACGAACTCCTCCCTTCGATGAATTATTGCAAATATTTCAGGATATCAAATTAGAAAATCGATCAAAACAAGGAAATGGAGAGATAAAGCATCTCATAGTGTCTGAAATTTCATCCATGAGAGACTCCAGAATACCTCTTATAGCCAAAAATTAATTGCATATTCTTTTAGTAGTAATACTACAATTTATTTGATAGAGTTATTCAAAAGTAGCATTGGGTTGGGTCGGGATTGTTTGGCTCTGTAAATTATGTACAGCATACACAGGCACAGGAAACAGAGACGTGTAGCATCAAACAATTATGAATTGGGTCCTTCAGGTCTTTGCCTGTTTTATTCGTTAGTCCTCCTCTTACAGATAGGAAGGAGCAAACATTTGGTTCCCCATTCAAAGTCATCAAAGGTGTAAGCATGTCCATGACTGGACTGTATTACAATGCAAGTCAGTCGT

Fln Alignment:

sp_v1.1_unigene13374___REAIQRTIESTRVISKVNTDFFATLESHASKLSQFVEEMQIVHDKKLEDLERKFEECAANEEKKLLENFAKMLAASTARKSELVQSAVQNLRENAVNKTHELQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEANQLLLASFTQAAASTNEAVKTGNXXXXXXXXXXXXXXXXVCINIHSIITPCTNEFIELQRSHYGKVVETTNQAEKYLQEEYMEDVPSCTTPRRRPISLPTMASIEQLRTPPFDELLQIFQDIKLENRSKQGNGEIKHL--IVSEISSMRDSRIP
D5A9P3_______________RERARTSIELMTSISGATMGFFENLADQASKFQQHIEHSHEVREQSIIDFQKAYEAQSRQEEQQLINDISNLVANAMVRKADMVNTRLSSLREKVIEDRESMQQGILSIDAATSDAKRKWETFAKQADNDANESAALSAAKHCRMELLLQQCVNITSNASQHWKTTKKTGEDHSRKYVTVMESLVRDGVEANDKHDAEIDDSRVSAEVDIEKNNESILLHVDSSVEHEHKVASEILSTIEAHSHTLEKLQNDHLKRVTHIEEQAEHCFCNEYMEDQPTSTTPSRQSIEIPSRDLIENMRAPPFEALVEEFR----ENNPHDVDLKIYHENGISKESKPRQDSLIP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1444	50		50		1.0
1483		50		50	1.0
1553	50		50		1.0
2091		80		20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain