SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13368

Length: 1845 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13368 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	delta-ADR (delta-adaptin); binding / clathrin binding / protein binding / protein transporter; K12396 AP-3 complex subunit delta-1	-	-	2.0e-23	30%
FL-Next	sp=AP-3 complex subunit delta; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	delta-adr (delta-adaptin) binding clathrin binding protein binding protein transporter	-	-	2.27608e-38	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9C744

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 260 aas, putative chimeric sequence, your sequence is shorter than subject: 99 - 869

Fln protein: KVKY*TS*QSKSGCDYGW*RLHLVRSAWKFVCQFRKQLDSYSAIDHAVELIKLNVSPLSESEDVEVQERACNLLGLITALEGIPGCLLENQILKKFKI*

Protein Length: 100

Fln nts: CAAGGTCAAATATTGAACTTCCTAGCAGAGCAAGAGTGGATGCGATTATGGATGGTGAAGACTTCACCTTGTCAGAAGTGCATGGAAGTTTGTCTGTCAATTCAGGAAACAACTCGATTCATATTCTGCAATTGATCATGCTGTTGAGCTAATCAAACTGAATGTCAGTCCCCTTTCAGAAAGTGAAGATGTGGAGGTGCAGGAGAGGGCATGCAATTTACTAGGCCTTATAACGGCACTAGAAGGCATTCCAGGGTGTCTTTTGGAAAATCAAATCCTAAAGAAATTCAAGATATAG___GGATAAACCAGGATTCTGGCGCTGCCCAGATTATCACATACATGAATAGTATATTTGCGCAAGAGCTTAGTCCTGTTTCAGTGCTTGCACAAGGAAGAGTACCATTACCAGATGGGCTTGTCCTCAAGGAGAATCTCGATGATTTGGTCAAAATTCTAGGCGATGAGCAAGTTTTAGATGACGGAGGTGTGGAGTGGTCTATCCCTCAGCATAGAGAGTGGGATGATGCTCCTGTGTTTTGTCAGCGCACTAAGGAAGAGTCACCATCAATTGGAGAATCAACTTCACTTTTAGCCCAACACCGACAGCGACATGGTGTGTTCTATCTACCTACAGGGAAAGATGAAACAAAAACTGATGACTATCCTCCACCTCAACTCGATGTCCCTTCTGGAGTGTCTGATGTAAACAAAGATATTTTGAAGCTTGCAGAGCAGTCTTTTCTTGCCACAAAACCACAACGGACTAAAGCACGGCCTGCAGTGATAAGGTTGGATGAGGGAGATGATGAACCAGTGTTAGCCACCAAGCAGGCAAAGAATTTGAAAGAAAATTATATTTCAAATGCCATCAAAGAAGCGCTATCTAGCGATAAAAATAAGCATTCAGTGGGGTCTGGTAGGGGTCAGGAAAAACTAGCTAAAGCTCCATCTGCTGAACATCATCATCGATCAGGACGGCGTTCTGAAACTTCTTCCAGGGGAGAGGACGGGAAAGAGGTAAAAGTGGGCAATACGGCCATTAATGTTTCAGAGGGGCATATTGATGGCACGAAAGGAAATAAAACTGAAAAGCACAGTTCCAGCAGGCACAAACATTCAAAGCATGAAAAGGAGGCATATAAACAATTTGAATTGAATTCCGAAGAGAAGGATGGACATTCGGAAAGGCATCTAAGAGGACATTCAAAAAAGAAAATCATCGTCATTCAAAGCATCGGAATCGACAAAGAGCAGATAGCCCCCTAAAAGTGGCTCCACAAACACCTGTTATTCCAGATTTCCTTTTATAGACACAATCTTTAGTTTTCCCGCTTACTCTGTAAAACAAAGAGGGAAGAAGCCAGTGAACATCCTTTTTTGGCTTGGATAAACGCATTTTTGATCAATGGGGAGCTGTGAATCCCATTATCAGCATTTTTCGTCGCCCACTCTAACCTGAGGAGTTGTCCAATTTGATCAATGTGCAACCTAGGGATTTACACCTGCCAGATTTTGATCCTGGGTTGTTTGCACGGCAATACATCTTCTCAACCACTGGACCACAGCCTGACGGATGCGTCTTTCTAATTTTTGATAGTAATTGTCGTGACTGGCTGTTTTACAGGTTAGTGCAGTCAATATCATTCTTTTCAATAGAGACACATCGTATGCTTTTTTTGTAATCATTTGCGTTTTTTGTAATCATTTTATATTTGTGCAAAAATTGTAGCATTTTTCAATGTTGCTTCAACAGAAAGTGCTCCAGCTTTTATGCTTGGTTGTAAGATTCTTTGTATTAAATATATATTGGTACTTGACATTATAGATTTGGAGATTGGCCAAAAT

Fln Alignment:

sp_v1.1_unigene13368___SYSAIDHAVELIKLNVSPLSESEDVEVQERACNLLGLITALE
Q9C744_______________THESILSLVNVIELGLGPLSGYHDVEVQERAKNVLGYISVIK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
62		33		66	0.997452
63		33		66	0.997452
65		66		33	0.997452
633		33		66	0.997452
634		66		33	0.997452
671		10		90	0.90298
1087		25	75		0.996473
1088		25		75	0.996473
1089		25		75	0.996473
1090	25		75		0.996473
1433		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain