SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13364

Length: 1208 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene13364 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RelA-SpoT like protein RSH1 n=1 Tax=Nicotiana tabacum RepID=Q84LE7_TOBAC	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	rsh1 (rela-spot homolog 1) catalytic	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	GTP diphosphokinase.	EC:2.7.6.5	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	83%
Blast2go	response to wounding	GO:0009611	Biological Process	83%
Blast2go	guanosine tetraphosphate metabolic process	GO:0015969	Biological Process	83%
Blast2go	GTP diphosphokinase activity	GO:0008728	Molecular Function	83%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	83%
Blast2go	amino acid binding	GO:0016597	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	83%
Blast2go	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	83%
Blast2go	RelA/SpoT	IPR007685	-	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK81

Fln msg: Distance to subject end: 327 aas, your sequence is shorter than subject: 402 - 901

Fln protein: RRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDSNVVTFERIEEEFGPVVRRIVEGETKVSKLGKLQCTDLKNSVQDVKANDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQRSIASETLKIFAPLAKLLGMYQIKSELETLSFMYINPDKFADLKRRVEQLNKEQEKELSEAKRMLVQRIEEDQFLDFMSMDVEVLSVSKELYSIYKMLLGREGSINEVNEIAQLRVILKPKQHDRVAPLCSSHQICYHILGLVHGIWTPIPREMKDYIATPKPNGYQSLQTKVIPFLNESTFRVEVQIRTEEMDCIAQKGIAVHYGGKGITSGSVQTNGRILRAKSTCLNSADIARRVSWLNAIREWQEEFVGNMSSREFVDTVTGDLLGSRVLYSH

Protein Length: 403

Fln nts: GCGGAGGAGTGGGGAGCCATTCATCATACATCCAGTAGAAGTTGCCCGTATCCTTGGCGAGCTTGAATTAGATTGGGAATCAATTGCAGCTGGCCTCTTACATGATACTGTGGAAGACAGTAATGTTGTTACTTTTGAAAGGATAGAAGAAGAGTTTGGTCCAGTTGTACGTCGCATTGTCGAAGGAGAAACAAAGGTTTCCAAGCTTGGTAAACTGCAATGTACAGATTTAAAAAATTCTGTCCAAGATGTGAAAGCTAATGATTTGCGCCAAATGTTTCTTGCTATGACTGAAGAGGTCCGTGTTATTATTGTGAAACTTGCCGACAGGTTACACAACATGCGTACTCTGTCTCACATGCCACCACATAAACAACGTAGCATCGCTTCAGAAACATTGAAGATTTTTGCACCTTTGGCTAAGTTGTTAGGGATGTACCAAATCAAGTCAGAGCTTGAAACACTATCCTTCATGTACATAAATCCAGATAAATTTGCTGACCTGAAAAGAAGAGTTGAACAGCTAAACAAAGAACAGGAAAAGGAACTTTCTGAGGCAAAAAGAATGTTGGTGCAGAGAATTGAAGAAGACCAGTTTCTTGATTTCATGTCGATGGATGTTGAAGTGCTTTCAGTGTCTAAGGAGCTCTACAGCATATACAAAATGCTTTTGGGAAGGGAAGGTTCAATCAATGAAGTAAATGAAATTGCTCAGCTGCGGGTCATACTGAAGCCAAAGCAACATGATAGGGTTGCACCATTATGCAGTTCACATCAGATATGCTACCACATCCTTGGCCTTGTGCACGGGATATGGACGCCTATTCCTCGAGAAATGAAGGATTATATTGCAACTCCCAAGCCTAATGGTTATCAAAGTCTTCAGACGAAGGTCATACCATTTTTAAATGAAAGTACATTTCGAGTTGAAGTGCAGATACGGACAGAAGAGATGGATTGTATAGCGCAGAAGGGAATTGCTGTCCATTACGGTGGTAAAGGGATCACCTCTGGCAGTGTGCAGACAAATGGAAGAATTCTAAGAGCCAAATCTACATGCTTGAATAGTGCTGACATTGCTCGCAGGGTAAGTTGGCTTAATGCCATTAGAGAGTGGCAAGAGGAATTTGTAGGCAATATGAGTTCTAGGGAATTTGTTGATACAGTTACAGGTGATCTTCTGGGCAGTCGTGTTTTGTATTCACACC

Fln Alignment:

sp_v1.1_unigene13364___RRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDSNVVTFERIEEEFGPVVRRIVEGETKVSKLGKLQCTDLKNSVQDVKANDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQRSIASETLKIFAPLAKLLGMYQIKSELETLSFMYINPDKFADLKRRVEQLNKEQEKELSEAKRMLVQRIEEDQFLDFMSMDVEVLSVSKELYSIYKMLLGREGSINEVNEIAQLRVILKPKQHDRVAPLCSSHQICYHILGLVHGIWTPIPREMKDYIATPKPNGYQSLQTKVIPFLNESTFRVEVQIRTEEMDCIAQKGIAVHYGGKGITSGSVQTNGRILRAKSTCLNSADIARRVSWLNAIREWQEEFVGNMSSREFVDTVTGDLLGSRV
B8LK81_______________RRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDSNVVTFERIEEEFGPVVRRIVEGETKVSKLGKLQCTDLKNSVQDVKANDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQCSIASETLKIFAPLAKLLGMYQIKSELETLSFMYTNPDKFADLKRRVEQLNKEQEKELSEAKRILVQKIEEDQFLDFMSMDVEVLSVCKELYSIYKMLLEREGSINKVNEIAQLRVILKPKQCDRVAPLCSSQQICYHILGLVHGIWTPIPREMKDYIATPKPNGYQSLQTKVIPFLNESTFRVEVQIRTEEMDCIAQRGIAVHYSGKGITSGSARTNGRILRGKATCLNSADIARRVSWLNAIREWQEEFVGNMSSREFVDTVTGDLLGSRV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
888	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain