SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13317

Length: 508 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13317
AGAACAACACAAGCCTTGCAGAGGCTGTTAGTCATGTGATGGATCTTTGGAGCTGAGTTTGGAGACCAGAGCCACGGGATACAATGCATCTGGATTGTCACACATATTCCTCATGAATAATTATTGGTATATATTCAAGAGAGCCAGAGACAGCAAACTAGGGAATCTGTTGGGTGAGGCATGGCTAAAGCAGAGGAAGAGATTGGTTAACAGACATGTTTTGGGTTATGAAAAGGAAGTATGGGTTCCCCTGGTGAAGCTTTTGAACAGAGATGGACTGGTTGTGTCCAGTGGTGGAAAGGGAGGAGCCAGGGATTTGTTTAAGCAGAGAATCCGCTCATTCAATTCCGCATTTGAGAAGTTATATGAAGAGCACAAGAATTGGTTGATCTCTGATGAAGAGCTCAGAGAGGGCACCTTTACGAAAATTGAGCAAGCTGTAATTCCTGCTTACAGGAACTACATTGAAAATTTCAGCAAATTGCTTGATCATTCTGCCAGTGAAAGC

Ace file of the UniGene sp_v1.1_unigene13317

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein binding protein, putative	-	-	5.0e-31	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	protein	-	-	2.01935e-33	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	exocytosis	GO:0006887	Biological Process	2.01935e-33	67%
Blast2go	cytosol	GO:0005829	Cellular Component	2.01935e-33	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.01935e-33	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exo70 exocyst complex subunit	IPR004140	-	2.01935e-33	67%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	2.01935e-33	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 28 aas, your sequence is shorter than subject: 169 - 647

Fln protein: EQHKPCRGC*SCDGSLELSLETRATGYNASGLSHIFLMNNYWYIFKRARDSKLGNLLGEAWLKQRKRLVNRHVLGYEKEVWVPLVKLLNRDGLVVSSGGKGGARDLFKQRIRSFNSAFEKLYEEHKNWLISDEELREGTFTKIEQAVIPAYRNYIENFSKLLDHSASES

Protein Length: 170

Fln nts: AGAACAACACAAGCCTTGCAGAGGCTGTTAGTCATGTGATGGATCTTTGGAGCTGAGTTTGGAGACCAGAGCCACGGGATACAATGCATCTGGATTGTCACACATATTCCTCATGAATAATTATTGGTATATATTCAAGAGAGCCAGAGACAGCAAACTAGGGAATCTGTTGGGTGAGGCATGGCTAAAGCAGAGGAAGAGATTGGTTAACAGACATGTTTTGGGTTATGAAAAGGAAGTATGGGTTCCCCTGGTGAAGCTTTTGAACAGAGATGGACTGGTTGTGTCCAGTGGTGGAAAGGGAGGAGCCAGGGATTTGTTTAAGCAGAGAATCCGCTCATTCAATTCCGCATTTGAGAAGTTATATGAAGAGCACAAGAATTGGTTGATCTCTGATGAAGAGCTCAGAGAGGGCACCTTTACGAAAATTGAGCAAGCTGTAATTCCTGCTTACAGGAACTACATTGAAAATTTCAGCAAATTGCTTGATCATTCTGCCAGTGAAAGC

Fln Alignment:

sp_v1.1_unigene13317___SLELSLETRATGYNASGLSHIFLMNNYWYIFKRARDSKLGNLLGEAWLKQRKRLVNRHVLGYEKEVWVPLVKLLNRDGLVVSSGGKGG-----------ARDLFKQRIRSFNSAFEKLYEEHKNWLISDEELREGTFTKIEQAVIPAYRNYIENFSKLLDH
A9NWM1_______________ALQTNLDGKSKQYKDPALTQLFLMNNIHYMVRSVRRSEAKDLLGDDWVQRHRRIVQQHANHYRRNAWGKILQCLTVQGL--SSSGSGGLGTDGSTSSSVSRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain