SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13310

Length: 1433 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13310

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-responsive protein IAA13, putative	-	-	2.0e-37	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	iaa13 transcription factor	-	-	0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	59%
Blast2go	pattern specification process	GO:0007389	Biological Process	59%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	59%
Blast2go	protein binding	GO:0005515	Molecular Function	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAQ4

Fln msg:

Fln protein: MDGVPIGRKVDLNAHDSYETLALALEDMFQRPNNGNGQSGSHIPMERGHVGANDPKHPRLLDSSSDFVLTYEDKEGDWMLVGDVPWRMFVNTVKRLRIMKTSDANGLAPRCPEKIDGQKSKAV*

Protein Length: 125

Fln nts: TTTGCGAAATCCAAGGGATATTTGTCTATATTCATGAATAACATCTAACATGTCTAGTAAATCTGTAGATCTAATTCAGAAGATTTGAACTACACAAATCCCCTGGACAAAAACTCTTTTCCACCCTCCCCTCACAGACAAAAAATTTCCTCAAAACAAGTCAGGAAATCTTCAGGTTCAATGAGATGTATTTAGAAAATTTGAGTTTTACAGAAATTATAAACCACTTGAAAGCTTGATTTCTCTAAGAAAAATACCCTCTTCAAAGAATAATTTTTCAAGAAAAAATTTAAATAACTTACTCTCAGAGATTATAACTCCAAGAGGTATGTGTTAATGAATTTTATTTATTGGCTTATTCTGCTGTTGGTTTAATCTAGAACTGCTTCCATTCTTGATTTTTCTCTTGTGACTTGATTAATGAGGTTTCAAAAGGTCAAGCGGTAGTGGGGTGGCCACCGATTGGGACATACAGATCAAAAACCCGTGCTACTACTCAGCCTCGGTCCCCCTTGTATGTCAAGGTGAAC_-_ATGGATGGTGTGCCTATTGGTAGAAAAGTCGATCTGAATGCTCATGACAGCTATGAAACTCTTGCTCTGGCCTTGGAAGATATGTTTCAACGGCCCAACAATGGCAACGGCCAAAGTGGCTCTCACATACCGATGGAAAGAGGGCATGTTGGTGCCAATGATCCCAAGCATCCAAGGCTTTTGGACAGCTCTTCGGACTTTGTCTTGACCTACGAGGACAAGGAGGGAGATTGGATGCTTGTTGGTGATGTCCCATGGAGGATGTTTGTCAATACCGTCAAAAGGCTAAGGATTATGAAAACCTCAGATGCCAATGGTCTAGCTCCAAGGTGTCCAGAGAAGATAGACGGGCAGAAGAGTAAAGCTGTTTGA___CAGAGCGCACTATAAGATCTGAACTGGATTTTGCATATAGCTTTCAATATACTGCATTGGAGTGGGATGGATTCGAGCTTTCTATCTTTATCCTCTCGCACAGAGTGATTTTTTTTGGCACATCCAGATTTCTGACCTAGAGGCTAGCCATACTCTATGTTTTTGTCCATGCAATGTGATATAATACCAACTGATATATCTGTATCAACCTTCATATGTTTATGCGGATAAAGTATACTATGTATTCAGTTTTGTCTTTTCACTAGATTAGAGATCCAGGCCATGGGGAGATACCATTTATGCCCAGTTTTTGGGTCTGGATATGGGGGAACAGTCCAGATTTATGGTGGGACTAAGTTGTTGTTAGTGGCTTTCATGCCGGCTTTTTCCTCATCTACTTTTGTACAGTCAAATTTTCCAACATGCAAGTGTTCTGACTTGTTATATTATGTTTATTTTGGAAACTGCCAATCAAATTGTACATTCAAGGATGCAGAGGAACAATTTGATTATCTTAACTTTTTGGTTAGT

Fln Alignment:

sp_v1.1_unigene13310___MDGVPIGRKVDLNAHDSYETLALALEDMFQRPNNGNGQSGSHIPMERGHVGANDPKHPRLLDSSSDFVLTYEDKEGDWMLVGDVPWRMFVNTVKRLRIMKTSDANGLAPRCPEKIDGQKSKAV
D5AAQ4_______________MDGVPIGRKVDLNAHDSYEALAQALEEMFQRPNNANGQSGPQTPMERGHVGANDPKQSRLLDSSSDFVLTYEDKEGDWMLVGDVPWRMFVNTVKRLRVMKTSDANGLAPRCPEKIDGQKSKAV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
313			20	80	0.995493
314	80		20		0.995493
315			20	80	0.995493
422	50			50	1.0
423	50		50		1.0
425		50	50		1.0
428	50			50	1.0
432	50		50		1.0
914	93		4		0.976545
915	4			95	0.995482
916	91	4	4		0.908347
917	91	4	2		0.908347
918			95	4	0.995881
919	93	2	4		0.979066
920			4	95	0.995881
924	95			4	0.995881

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain