SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13296

Length: 1293 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13296

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SAP domain-containing protein	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	61%
Blast2go	cytosol	GO:0005829	Cellular Component	61%
Blast2go	chloroplast	GO:0009507	Cellular Component	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLW2

Fln msg: your sequence is shorter than subject: 320 - 669

Fln protein: KDKEIESSVNDVETPRDKRKKEGQEAGMHEPVKRQRRWNSGNNLTGEVAKVSTKDGELPGYSSAASAATSGPTVANRPALLKPVMSRSDSTNSADGQKERVVPPSPRPPTTSLRIDRFLRPFTLKAVQELLAKTGVVTNFWMDHIKTHCYVTYSSTEEAVATRNTLYNLQWPSNGGRQLIAEYVDPEEVKHKIEGPPQAAPAPGPVSGPSHSTNVMQNQMPFKIPPQCPAGPSQHSLPPPPPLPLPPPPPMPPAVRERQPQPQTQPQPQPQSLKKVEQPVVTLDDLFKKTRTSPRIYYLPLSEEQVAAKLAAKARNKGS*

Protein Length: 321

Fln nts: AAGGATAAGGAAATAGAAAGCAGTGTCAATGACGTCGAAACTCCTCGTGACAAAAGGAAAAAGGAAGGCCAGGAAGCTGGAATGCATGAGCCTGTAAAGCGACAGAGGCGGTGGAACTCAGGGAATAATCTCACCGGAGAGGTAGCAAAGGTTTCAACAAAAGATGGAGAGTTGCCGGGATATTCCTCAGCTGCTTCTGCTGCAACTTCAGGTCCAACTGTTGCAAATAGGCCAGCACTCTTGAAGCCTGTGATGTCCAGATCAGATTCAACAAACAGTGCTGATGGTCAGAAAGAGCGTGTTGTGCCGCCTTCACCAAGGCCTCCAACCACTTCTTTGAGAATAGATAGGTTTTTACGTCCATTTACATTAAAGGCTGTGCAAGAGCTTCTAGCCAAGACTGGCGTTGTTACTAATTTTTGGATGGATCACATCAAAACACACTGCTATGTTACGTACTCTTCTACAGAGGAGGCTGTTGCCACTCGCAACACATTATACAATTTGCAGTGGCCTTCGAATGGTGGGCGCCAGTTGATTGCTGAGTATGTTGATCCGGAGGAGGTGAAACACAAAATCGAAGGGCCTCCACAGGCAGCTCCTGCACCGGGGCCAGTTAGTGGTCCATCACATTCTACCAATGTAATGCAGAATCAGATGCCTTTTAAGATTCCTCCACAATGTCCAGCAGGACCATCACAGCATTCATTGCCTCCCCCACCACCTCTGCCACTGCCACCCCCTCCACCAATGCCCCCTGCAGTGAGGGAAAGGCAGCCACAGCCACAGACACAGCCGCAACCCCAACCACAATCACTTAAGAAAGTGGAACAGCCTGTTGTTACCCTTGATGACTTGTTTAAGAAGACCAGAACAAGCCCTCGCATCTATTACCTGCCATTGTCTGAAGAACAAGTTGCTGCCAAACTTGCTGCAAAAGCTAGGAACAAGGGTAGTTGA___CCATCTTTTGTAATGCAGTTTAAGAATATGCTGTTCAGAATGAATTAGCACCATGGAAATTGTGCTGTTAGTGTTTCCCAGGAATGGTTGTACTTTTTTTTCAACCGATATATATCACTTGAAGTTTGTAGTTCTCGCGATCAAAATTTTGATTATTAGTAGTACGGATCTGGGCCTTGTATTTTTGTAACTATTGACGCTGAGTTTTTCATCTATTGTTATTATATGATGAACTGGAGTCTAAATTCATGTTTTTTGATAGCTGTTTACGTGGGTTCTTTACCGTGGTTAGGAATACAAGTGCATATTACATTTTGGTCATTGCATGATCCC

Fln Alignment:

sp_v1.1_unigene13296___KDKEIESSVNDVETPRDKRKKEGQEAGMHEPVKRQRRWNSGNNLTGEVAKVSTKDGELPGYXXXXXXXXXGPTVANRPALLKPVMSRSDSTNSADGQKEXXXXXXXXXXXXXLRIDRFLRPFTLKAVQELLAKTGVVTNFWMDHIKTHCYVTYSSTEEAVATRNTLYNLQWPSNGGRQLIAEYVDPEEVKHKIEXXXXXXXXXXXXXXXXXXTNVMQNQMPFKIPPQCPAGPSQHSXXXXXXXXXXXXXXXXXAVRERXXXXXXXXXXXXXSLKKVEQPVVTLDDLFKKTRTSPRIYYLPLSEEQVAAKLAAKARNKGS
B8LLW2_______________KDKEMEGSGNDVETPRDKRKKEGQEAGLHEPVKRQRRWNSGNNLSGDVAKVSTKDGELPAYSSAASAATSGSTVANRPAPLKPMMSRPDSTNNGDGQKERVVPPSPRPPTTSLRIDRFLRPFTLKAVQELLAKTGVVTSFWMDHIKTHCYVTYSSIEEAVATRNTLYNLQWPSNGGRQLIAEYVDPEEVKHKTEGPPQAAPAPGPVSAPPHPTNVTQNQMPFKIPAQGTAGPSQHLLPPPPPLPLPPPPPMPPAVRERQPQPQTQPQLQPQPLKKVEQPVVTLDDLFKKTRTSPRIYYLPLSEEQVAAKLAAKARNKGS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
48		33		66	0.997452
242		10		90	0.90298
245	90	10			0.90298
246			90	10	0.90298
248	10	90			0.90298
296	90		10		0.90298
331	88		11		0.923564
345	87	12			0.999964
701	88		11		0.999952
702			70	29	1.0
704	88		11		0.999952
706			11	88	0.999952
708	82	11			0.999919
712		86	13		0.999973
715		86	13		0.999973
716		86		13	0.999973
721	12	87			0.999964
1197			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain