SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13287

Length: 279 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene13287
TTGCTGAAGGTCTATGAGACATGGAAGGAAACAAACTTTTCAACGCAGTGGTGTTATGAAAACTACATTCAGGTGAGGAGTATGAAACGAGCACGAGACATCAGAGATCAATTAGAGGGACTGTTAGAAAGGGTTGAGATAGAGCCTTCAACCAATTTAAATGATCTTGAGTCAATAAAGAAGGCTATAACGTCAGGATACTTTTACCACACTTCCAAGCTGCAGAAAAATGGATCCTATCGCACAGTCAAGAACCCGCAAATTGTACATATACATCCA

Ace file of the UniGene sp_v1.1_unigene13287

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ESP3; ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding; K12813 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13]	-	-	8.0e-40	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	rna helicase	-	-	1.62188e-40	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	8.0e-40	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	1.62188e-40	90%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.62188e-40	90%
Blast2go	RNA splicing	GO:0008380	Biological Process	1.62188e-40	90%
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	1.62188e-40	90%
Blast2go	ATP-dependent RNA helicase activity	GO:0004004	Molecular Function	1.62188e-40	90%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	1.62188e-40	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	1.62188e-40	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF1605	IPR011709	-	1.62188e-40	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 93 - 348

Fln protein: LLKVYETWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEPSTNLNDLESIKKAITSGYFYHTSKLQKNGSYRTVKNPQIVHIHP

Protein Length: 94

Fln nts: TTGCTGAAGGTCTATGAGACATGGAAGGAAACAAACTTTTCAACGCAGTGGTGTTATGAAAACTACATTCAGGTGAGGAGTATGAAACGAGCACGAGACATCAGAGATCAATTAGAGGGACTGTTAGAAAGGGTTGAGATAGAGCCTTCAACCAATTTAAATGATCTTGAGTCAATAAAGAAGGCTATAACGTCAGGATACTTTTACCACACTTCCAAGCTGCAGAAAAATGGATCCTATCGCACAGTCAAGAACCCGCAAATTGTACATATACATCCA

Fln Alignment:

sp_v1.1_unigene13287___LLKVYETWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEPSTNLNDLESIKKAITSGYFYHTSKLQKNGSYRTVKNPQIVHIHP
D5ADJ5_______________LLNVYQQWKSNQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKMQKITLTTCGHDWDVIRKAICSAYFHNAARLKGIGEYANSRTGMPCHLHP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
238		75	25		0.996473
239		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain