SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13263

Length: 1161 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene13263

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Root phototropism protein, putative n=1 Tax=Ricinus communis RepID=B9SKU3_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	phototropic-responsive nph3 family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	75%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	75%
Blast2go	NPH3	IPR004249	-	75%
Blast2go	BTB/POZ fold	IPR011333	-	75%
Blast2go	BTB/POZ	IPR013069	-	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 352 aas, your sequence is shorter than subject: 296 - 648

Fln protein: MLMPSTSMACEKLGSKPDGFERRGQAWFCTSGLPSDIVIEVGAMSFHLHKFPLMSRSGKLAKLIAEYKEDEICCLSLSDIPGGPETFELAAKFCYGMKLEITPHNVAALQCIANYLEMTEEYGEGNLLTKAEGFLDQVVLRSWKDSVQALQSCDGFIQKAEELQIVRKCVDSLAMKACTDPSLIGWPTQEQEGLHSPGGSILWNGISTGARHRHPQSDWWYEDIAVLSLPLFKLLISAMEEKQIRAENIAGALVYYAKKSIPGLTRRQVGNANSGLPLGSAPSEFSQREILETIES

Protein Length: 297

Fln nts: GATGAAAGAGAATGTGGGGATTAAAAGCAGTTGGTCTGTCCTCTTATACATATATTCCTATAACTTATGAGGGTTGCTGTGTCTCTTGCCTATTTGGGAAGTTCTCATCTTAATCCGTGCTTCTCATCGTGTCATTGTCCAGTGAAGAATCTCTGTTTATATGAATGCAGGATTTGCATTCAGCTGACGTTTCCAGTCTGCATGTTTTCTGTTGTTCAAGTTATTTTCAGCAGAAAATCAATGTGCTTTTATTGTTAGCACTAAATGTTTT_-_ATGTTGATGCCTTCAACATCAATGGCTTGTGAGAAGTTGGGCTCCAAACCAGATGGATTTGAAAGAAGAGGACAGGCATGGTTTTGCACAAGTGGACTACCCAGTGATATCGTCATCGAAGTGGGTGCAATGTCTTTCCATTTACACAAGTTTCCTCTGATGTCGAGGAGTGGGAAGTTGGCAAAGCTCATAGCAGAGTATAAGGAAGATGAAATCTGCTGCCTCTCTTTGTCAGACATTCCTGGAGGGCCTGAGACTTTTGAACTTGCTGCCAAATTTTGCTATGGTATGAAATTGGAGATCACGCCCCATAATGTGGCTGCCTTGCAGTGTATTGCTAATTATTTGGAAATGACAGAGGAGTACGGGGAAGGAAATTTATTAACAAAAGCTGAAGGATTTCTTGACCAAGTGGTGCTTCGGAGCTGGAAGGACTCTGTACAAGCCTTGCAGAGTTGTGATGGATTTATTCAGAAAGCAGAAGAGCTGCAAATAGTGCGGAAATGTGTGGATTCTCTTGCAATGAAGGCCTGTACTGATCCCAGCCTTATTGGATGGCCTACACAAGAGCAAGAGGGGCTGCATAGTCCAGGTGGTAGTATTCTCTGGAATGGTATTAGCACAGGGGCAAGACATAGGCATCCTCAATCAGATTGGTGGTATGAAGACATTGCAGTCCTCAGCTTGCCACTGTTCAAGCTTTTAATCTCTGCAATGGAGGAGAAACAAATACGAGCAGAAAATATTGCAGGAGCCCTTGTATATTATGCTAAGAAGTCCATCCCAGGACTCACTAGGAGACAGGTAGGAAATGCAAACTCGGGCCTGCCCTTGGGATCTGCTCCTTCTGAGTTTAGTCAGAGAGAGATCCTGGAGACTATAGAGAGTCT

Fln Alignment:

sp_v1.1_unigene13263___MACEKLGSKPDGFERRGQAWFCTSGLPSDIVIEVGAMSFHLHKFPLMSRSGKLAKLIAEY-----KEDEICCLSLSDIPGGPETFELAAKFCYGMKLEITPHNVAALQCIANYLEMTEEYGEGNLLTKAEGFLDQVVLRSWKDSVQALQSCDGFIQKAEELQIVRKCVDSLAMKACTDPSLIGWPTQE---QEGLHSPGGSILWNGISTGARHRHPQSDWWYEDIAVLSLPLFKLLISAMEEKQIRAENIAGALVYYAKKSIPGLTRRQVGNANSGLPLGSAPSEFSQREILETIES
B8LPD8_______________MALEKLGSKPDGFQRRGQAWFCTTGLPSDIIIEVEEMFFHLHKFPLISRSGKLSRLISQTPDDDDEEEQSFHIILPDIPGGADAFELAAKFCYGVKLELTPINVTPLRCAAEYLEMTEEFGEGNLILKTEGFLNHVVLRSWKDSVRTLQSCECLMPLAEELNIVKKCVDSIAMKACTDPSLFGWPMTEGMGMQGMQSTKGGVLWNGINAGTRQRTAHLDWWHEDVAELSLPFYKRVISAMEAKGIRQESIAGAVMYYAKKFIPGLTRRQ-GIAKT-LSLTSAPCEADQRELLETIES

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
215			33	66	0.997452
278	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain