SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13262

Length: 528 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene13262
TCCCGGGTGAGGAATTCGGCCGAGGCACCATAGTCCTAAGTGCATCTCTTCTCCCTCACCTAAATCCTAGAATGGGATCAGTTAAAAGAGTTGCAGGCCGTTATAGTTCAATGGCAGCTATTTCTAGGTTTCATAAATTGTTGTTAGTTGTGGCTTTGATCCTCATAAATGAAGCCTCTGTTCTTGTAATGATAGTGACAGCTGATCAAAGTCTGCAACCTCCGTTGATATCTAACCCAGTGACCAGCTATTTCAAAACCATGGCGTTTGATGGAAGTTTTTCAAATTTGTGGGGCGCGGGGCATCAGAATGTCTCGCAAGATGGAAAAGCCGTGACGCTCAAGATTGACAGATATTCTGGCGGTGGATTTAAATCGAAGCAGTCTTATATGTATGGCTTCTTCAACGCGGCACTGAAGCTGCAAGCTGGTTACACGGCCGGGATTGTGACAACTTTTTATTTGTCCAATNGTCAGGTCTATCCTGATCGACATGATGAGTTNGACTTCGAGTTTCTGGGGACGATTC

Ace file of the UniGene sp_v1.1_unigene13262 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 32 n=2 Tax=Zea mays RepID=B6T9H5_MAIZE	-	-	2.0e-25	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 32	-	-	2.54297e-32	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	2.54297e-32	64%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	2.54297e-32	64%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	2.54297e-32	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	2.54297e-32	64%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	2.54297e-32	64%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	2.54297e-32	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSD3

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 152 - 309

Fln protein: MGSVKRVAGRYSSMAAISRFHKLLLVVALILINEASVLVMIVTADQSLQPPLISNPVTSYFKTMAFDGSFSNLWGAGHQNVSQDGKAVTLKIDRYSGGGFKSKQSYMYGFFNAALKLQAGYTAGIVTTFYLSNGQVYPDRHDEFDFEFLGTI

Protein Length: 153

Fln nts: TCCCGGGTGAGGAATTCGGCCGAGGCACCATAGTCCTAAGTGCATCTCTTCTCCCTCACCTAAATCCTAGA_-_ATGGGATCAGTTAAAAGAGTTGCAGGCCGTTATAGTTCAATGGCAGCTATTTCTAGGTTTCATAAATTGTTGTTAGTTGTGGCTTTGATCCTCATAAATGAAGCCTCTGTTCTTGTAATGATAGTGACAGCTGATCAAAGTCTGCAACCTCCGTTGATATCTAACCCAGTGACCAGCTATTTCAAAACCATGGCGTTTGATGGAAGTTTTTCAAATTTGTGGGGCGCGGGGCATCAGAATGTCTCGCAAGATGGAAAAGCCGTGACGCTCAAGATTGACAGATATTCTGGCGGTGGATTTAAATCGAAGCAGTCTTATATGTATGGCTTCTTCAACGCGGCACTGAAGCTGCAAGCTGGTTACACGGCCGGGATTGTGACAACTTTTTATTTGTCCAATgGTCAGGTCTATCCTGATCGACATGATGAGTTtGACTTCGAGTTTCTGGGGACGATTC

Fln Alignment:

sp_v1.1_unigene13262___PPLISNPVTSYFKTMAFDGSFSNLWGAGHQNVSQDGKAVTLKIDRYSGGGFKSKQSYMYGFFNAALKLQAGYTAGIVTTFYLSNGQVYPDRHDEFDFEFLGTI
A9NSD3_______________PSLPGVPVMNYFKTLKFSEGYVNLWGGQHQNISKDESAVTLALDRSSGSGFKSNEPYMYGFFNAAVKLQGGYTAGIITSFYLSNSQVYEGWHDEIDIEFLGTI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
58		33		66	0.997452
192		25	75		0.996473
479	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain