SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13254

Length: 404 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13254
TGGAATTTGGCGATCGTGTAAAGAATTGGATGACTTTCAATGTAACCCAACTTTTTTTCTAATGTCCGGTTATGGTTCTGATATCTTCGCCCCCCAAAGATGTTCCCCAGGGTTCGGAAATTGTAGCGCTGGGAATTCATCGGTGGAGCCATATATTGTTGGCCACAATGTCTTGCTAGCACACGCGGCAGTGGTTGAGCTCTATCGACAGAGATACCAGGCACAGCAAGGTGGCTCTATTGGGTTGACAATCGTTTCTCTATGGTTTGATCCCCTCACAGACGAATTTAATGACCTTGTCGCAGCCCAAAGGATGCGCGATTTCCAGATTGGATGGTTCATAGATCCTCTTATTTTTGGAGACTATCCTGCTTCCATGAAGGAAAGGGTCGGTTCTCGTTTGC

Ace file of the UniGene sp_v1.1_unigene13254

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase 40 n=2 Tax=Arabidopsis RepID=BGL40_ARATH	-	-	4.0e-36	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	glycosyl hydrolase family 1 protein	-	-	6.71465e-38	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amygdalin beta-glucosidase.	EC:3.2.1.117	-	6.71465e-38	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cyanoamino acid metabolism	00460		6.71465e-38	73%
Blast2go	Beta-mannosidase.	EC:3.2.1.25	-	6.71465e-38	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		6.71465e-38	73%
Blast2go	Beta-glucosidase.	EC:3.2.1.21	-	6.71465e-38	73%

Source	KEGGs	Term	e value	Identity
Blast2go	Cyanoamino acid metabolism	00460	6.71465e-38	73%
Blast2go	Starch and sucrose metabolism	00500	6.71465e-38	73%
Blast2go	Phenylpropanoid biosynthesis	00940	6.71465e-38	73%
Blast2go	Biosynthesis of secondary metabolites	01110	6.71465e-38	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	6.71465e-38	73%
Blast2go	cellobiose glucosidase activity	GO:0080079	Molecular Function	6.71465e-38	73%
Blast2go	amygdalin beta-glucosidase activity	GO:0047668	Molecular Function	6.71465e-38	73%
Blast2go	beta-mannosidase activity	GO:0004567	Molecular Function	6.71465e-38	73%
Blast2go	esculin beta-glucosidase activity	GO:0080082	Molecular Function	6.71465e-38	73%
Blast2go	4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	GO:0080081	Molecular Function	6.71465e-38	73%
Blast2go	beta-glucosidase activity	GO:0008422	Molecular Function	6.71465e-38	73%
Blast2go	beta-gentiobiose beta-glucosidase activity	GO:0080083	Molecular Function	6.71465e-38	73%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	6.71465e-38	73%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	6.71465e-38	73%
Blast2go	apoplast	GO:0048046	Cellular Component	6.71465e-38	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	6.71465e-38	73%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	6.71465e-38	73%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	6.71465e-38	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACM5

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 134 - 415

Fln protein: GIWRSCKELDDFQCNPTFFLMSGYGSDIFAPQRCSPGFGNCSAGNSSVEPYIVGHNVLLAHAAVVELYRQRYQAQQGGSIGLTIVSLWFDPLTDEFNDLVAAQRMRDFQIGWFIDPLIFGDYPASMKERVGSRL

Protein Length: 135

Fln nts: TGGAATTTGGCGATCGTGTAAAGAATTGGATGACTTTCAATGTAACCCAACTTTTTTTCTAATGTCCGGTTATGGTTCTGATATCTTCGCCCCCCAAAGATGTTCCCCAGGGTTCGGAAATTGTAGCGCTGGGAATTCATCGGTGGAGCCATATATTGTTGGCCACAATGTCTTGCTAGCACACGCGGCAGTGGTTGAGCTCTATCGACAGAGATACCAGGCACAGCAAGGTGGCTCTATTGGGTTGACAATCGTTTCTCTATGGTTTGATCCCCTCACAGACGAATTTAATGACCTTGTCGCAGCCCAAAGGATGCGCGATTTCCAGATTGGATGGTTCATAGATCCTCTTATTTTTGGAGACTATCCTGCTTCCATGAAGGAAAGGGTCGGTTCTCGTTTGC

Fln Alignment:

sp_v1.1_unigene13254___PTFFLMSGYGSDIFAPQRCSPGFGNCSAGNSSVEPYIVGHNVLLAHAAVVELYRQRYQAQQGGSIGLTIVSLWFDPLTDEFNDLVAAQRMRDFQIGWFIDPLIFGDYPASMKERVGSRL
D5ACM5_______________PNIFASLGYDRGIIASKRCSIPVGRCKTGNSTIEPYLAGHYMLLSHAAAVKLYRDKYQAKQKGSIGLIILSQWYRSLTNTIQDITATQRMTDFEIGWFLDPLIYGDYPKVMRQIVGSRL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain