SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13230

Length: 560 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene13230
GGTGTCTTGATGGCTGCCGCTAGACACAACAGGCCAACCATCATCGTATATGGTGGTACAATTCAAGTTGGGACACGCCAACTCGACTGCCCTTCCATGGGTTTCGAGAAAGGCGGGACTGTTAATGTCGCGGACGCTTTCGAGTCATATGGTGCCTACGCTGTTGGCCTCATTAACGATGAGGAACGATTTGATGTCGTCAGGCATTCATGCCCAGGTGCTGGTGCCTGTGGTGGCATGTACACGGCAAACACGATGAGTTCCGCCCTCGAAGTCCTGGGTATGTCTCTTCCCTACTCCTCGAGCACGCCGGCATTATACCCTGAGAAGGCACAGGAATGCTTCAAAGTTGCCAAGTACATGAAACGTCTTTTGGAGCTTGATTTGAAGCCCCGGGATATCCTCACTCGCCAATCTTTCCTGAATGCAATCACTATCGTTAATATCCTCGGTGGCTCAACTAATGCTGTACTTCACTTGCTGGCCATGGCCCGTGCCGCTGAGGTTCCCTTAACCATCGACGACTTTCAGATGATTTCGGACAAGACTCCTTACCTTGC

Ace file of the UniGene sp_v1.1_unigene13230

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dihydroxy-acid dehydratase	-	-	80%
FL-Next	tr=Acetohydroxyacid dehydratase; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	58%
Blast2go	dihydroxy-acid dehydratase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydroxy-acid dehydratase.	EC:4.2.1.9	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	76%
Blast2go	Pantothenate and CoA biosynthesis	00770	76%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	76%
Blast2go	Metabolic pathways	01100	76%
Blast2go	Biosynthesis of secondary metabolites	01110	76%

Source	GOs	Term	Type	Identity
Blast2go	isoleucine biosynthetic process	GO:0009097	Biological Process	76%
Blast2go	valine biosynthetic process	GO:0009099	Biological Process	76%
Blast2go	dihydroxy-acid dehydratase activity	GO:0004160	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dihydroxy-acid/6-phosphogluconate dehydratase	IPR000581	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A8IX80

Fln msg: Distance to subject end: 253 aas, your sequence is shorter than subject: 186 - 604

Fln protein: GVLMAAARHNRPTIIVYGGTIQVGTRQLDCPSMGFEKGGTVNVADAFESYGAYAVGLINDEERFDVVRHSCPGAGACGGMYTANTMSSALEVLGMSLPYSSSTPALYPEKAQECFKVAKYMKRLLELDLKPRDILTRQSFLNAITIVNILGGSTNAVLHLLAMARAAEVPLTIDDFQMISDKTPYL

Protein Length: 187

Fln nts: GGTGTCTTGATGGCTGCCGCTAGACACAACAGGCCAACCATCATCGTATATGGTGGTACAATTCAAGTTGGGACACGCCAACTCGACTGCCCTTCCATGGGTTTCGAGAAAGGCGGGACTGTTAATGTCGCGGACGCTTTCGAGTCATATGGTGCCTACGCTGTTGGCCTCATTAACGATGAGGAACGATTTGATGTCGTCAGGCATTCATGCCCAGGTGCTGGTGCCTGTGGTGGCATGTACACGGCAAACACGATGAGTTCCGCCCTCGAAGTCCTGGGTATGTCTCTTCCCTACTCCTCGAGCACGCCGGCATTATACCCTGAGAAGGCACAGGAATGCTTCAAAGTTGCCAAGTACATGAAACGTCTTTTGGAGCTTGATTTGAAGCCCCGGGATATCCTCACTCGCCAATCTTTCCTGAATGCAATCACTATCGTTAATATCCTCGGTGGCTCAACTAATGCTGTACTTCACTTGCTGGCCATGGCCCGTGCCGCTGAGGTTCCCTTAACCATCGACGACTTTCAGATGATTTCGGACAAGACTCCTTACCTTGC

Fln Alignment:

sp_v1.1_unigene13230___GVLMAAARHNRPTIIVYGGTIQVGTRQLDCPSMGFEKGGTVNVADAFESYGAYAVGLINDEERFDVVRHSCPGAGACGGMYTANTMSSALEVLGMSLPYSSSTPALYPEKAQECFKVAKYMKRLLELDLKPRDILTRQSFLNAITIVNILGGSTNAVLHLLAMARAAEVPLTIDDFQMISDKTPYL
A8IX80_______________GTLMAMARLNRPSLMIYGGTIKPGHSRMD--------GSVLDIVSAFQSYGAYSAGLINEAQRVDIVRNSCPGAGACGGMYTANTMASAIEALGMTLPYSSSIPAEDPLKKDECRMAGRYMLELLKSDLKPLDIMTYKAFENAMVLVMATGGSTNAVLHFIAMARACGVPLTLDDFQRVSDRTPFI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain